Publications in the Plant Evolutionary Genomics group

• 2021
• 2020
• 2019
• 2018
• 2017
• 2016
• 2015
• 2014
• 2013
• 2012
• 2011
• 2010
• 2009

2021

• Kösters, LM, Wiechers, S, Lyko, P, Müller, KF, and Wicke, S. 2021. “WARPP - web application for the research of parasitic plants.” Plant Physiology, № 185: 1374–1380. doi: 10.1093/plphys/kiaa105.

2020

• Charoenwattanasatien, R, Zinzius, K, Scholz, M, Wicke, S, Tanaka, H, Brandenburg, JS, Ikegami, T, Matsumoto, T, Oda, T, Sato, M, Hippler, M, and Kurisu, G. 2020. “Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii.” Journal of Biological Chemistry, № 295 (1): 170–180. doi: 10.1074/jbc.RA119.008735.
• Chen, X, Fang, D, Wu, C, Liu, B, Liu, Y, Sahu, SK, Song, B, Yang, S, Yang, T, Wei, J, Wang, X, Zhang, W, Xu, Q, Wang, H, Yuan, L, Liao, X, Chen, L, Chen, Z, Fu, Y, Chang, Y, Lu, L, Yang, H, Wang, J, Xu, X, Liu, X, Wicke, S, and Liu, H. 2020. “Comparative plastome analysis of root- and stem-feeding parasites of Santalales untangle the footprints of feeding mode and lifestyle transitions.” Genome Biology and Evolution, № 12 (1): 3663–3676. doi: 10.1093/gbe/evz271.
• Li, F-W, Nishiyama, T, Waller, M, Frangedakis, E, Keller, J, Li, Z, Fernandez-Pozo, N, Barker, MS, Bennett, T, Blázquez, MA, Cheng, S, Cuming, AC, de Vries, J, de Vries, S, Delaux, P-M, Diop, IS, Harrison, CJ, Hauser, D, Hernández-García, J, Kirbis, A, Meeks, JC, Monte, I, Mutte, SK, Neubauer, A, Quandt, D, Robison, T, Shimamura, M, Rensing, SA, Villarreal, JC, Weijers, D, Wicke, S, Wong, GK-S, Sakakibara, K, and Szövényi, P. 2020. “Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts.” Nature Plants, № 6: 259–272. doi: 10.1038/s41477-020-0618-2.

2019

• Qu, XJ, Fan, SJ, Wicke, S, and Yi, TS. 2019. “Plastome reduction in the only parasitic gymnosperm Parasitaxus is due to losses of photosynthesis but not housekeeping genes and apparently involves the secondary gain of a large inverted repeat.” Genome Biology and Evolution, № 11 (10): 2789–2796. doi: 10.1093/gbe/evz187.
• Aly, R, Lati, R, Abu-Nassar, J, Ziadna, H, Achdari, G, von Muenchow, CS, Wicke, S, Bari, VK, and Eizenberg, H. 2019. “The weedy parasite Phelipanche aegyptiaca attacks Brassica rapa var. rapa L. for the first time in Israel.” Plant Disease, № 2019: 1. doi: 10.1094/PDIS-02-19-0285-PDN.

2018

• Wicke, S, and Naumann, J. 2018. “Molecular evolution of plastid genomes in parasitic flowering plants.” in Advances in Botanical Research, Vol. 85 of Plastid Genome Evolution, edited by S-M Chaw and RK Jansen. Boston, New York, San Diego: Academic Press. doi: 10.1016/bs.abr.2017.11.014.
• Maul, K, Krug, M, Nickrent, DL, Müller, KF, Quandt, D, and Wicke, S. 2018. “Morphology, geographic distribution, and host preferences are poor predictors of phylogenetic relatedness in the mistletoe genus Viscum L.” Molecular Phylogenetics and Evolution, № 131: 106–115. doi: 10.1016/j.ympev.2018.10.041.
• Barrett, CF, Wicke, S, and Sass, C. 2018. “Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex.” New Phytologist, № 218 (3): 1192–1204. doi: 10.1111/nph.15072.
• Wang, Y-H, Wicke, S, Wang, H, Jin, J-J, Chen, S-Y, Zhang, S-D, Li, D-Z, and Yi, T-S. 2018. “Plastid genome evolution in the early-diverging legume subfamily Cercidoideae (Fabaceae).” Frontiers in Plant Science, № 8: 138. doi: 10.3389/fpls.2018.00138.

2017

• Noben, S, Kessler, M, Quandt, D, Weigand, A, Wicke, S, Krug, M, and Lehnert, M. 2017. “Biogeography of the Gondwanan tree fern family Dicksoniaceae—A tale of vicariance, dispersal and extinction.” Journal of Biogeography, № 44 (11): 2648–2659. doi: 10.1111/jbi.13056.
• Levy, Karin E, Ashkenazy, H, Wicke, S, Pupko, T, and Mayrose, I. 2017. “TraitRateProp: A web server for the detection of trait-dependent evolutionary rate shifts in sequence sites.” Nucleic Acids Research, № 45 (1): W260–W264. doi: 10.1093/nar/gkx288.
• Levy, Karin E, Wicke, S, Pupko, T, and Mayrose, I. 2017. “An integrated model of phenotypic trait changes and site-specific sequence evolution.” Systematic Biology, № 66 (6): 917–933. doi: 10.1093/sysbio/syx032.
• Röschenbleck, J, Wicke, S, Weinl, S, Kudla, J, and Müller, KF. 2017. “Genus-wide screening reveals four distinct types of structural plastid genome organization in Pelargonium (Geraniaceae).” Genome Biology and Evolution, № 9 (1): 64–76. doi: 10.1093/gbe/evw271.

2016

• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Bellot, S, and Schneeweiss, GM. 2016. “Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants.” Proceedings of the National Academy of Sciences of the United States of America, № 113 (32): 9045–9050. doi: 10.1073/pnas.1607576113.
• Feng, YL, Wicke, S, Li, JW, Han, Y, Lin, CS, Li, DZ, Zhou, TT, Huang, WC, Huang, LQ, and Jin, XH. 2016. “Lineage-specific reductions of plastid genomes in an orchid tribe with partially and fully mycoheterotrophic species.” Genome Biology and Evolution, № 8 (7): 2164–2175. doi: 10.1093/gbe/evw144.
• Cusimano, N, and Wicke, S. 2016. “Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae.” New Phytologist, № 210 (2): 680–693. doi: 10.1111/nph.13784.

2015

• Wicke, S, and Schneeweiss, GM. 2015. “Next generation organellar genomics: Potentials and pitfalls of high-throughput technologies for molecular evolutionary studies and plant systematics.” in Next generation sequencing in plant systematics, Regnum Vegetabile, edited by E Hörandl and M Appelhans. Oberreifenberg / Koenigstein: Koeltz. doi: 10.14630/000002.
• Szövényi, P, Frangedakis, E, Ricca, M, Quandt, D, Wicke, S, and Langdale, JA. 2015. “Establishment of Anthoceros agrestis as a model species for studying the biology of hornworts.” BMC Plant Biology, № 15: 98. doi: 10.1186/s12870-015-0481-x.

2014

• Wicke, S, Schäferhoff, B, dePamphilis, CW, and Müller, KF. 2014. “Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae.” Molecular Biology and Evolution, № 31 (3): 529–545. doi: 10.1093/molbev/mst261.

2013

• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Wickett, NJ, Zhang, Y, Renner, SS, and Schneeweiss, GM. 2013. “Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family.” The Plant Cell, № 25: 3711–3725. doi: 10.1105/tpc.113.113373.
• Wicke, S. 2013. “Genomic evolution in Orobanchaceae.” in Parasitic Orobanchaceae - Parasitic Mechanisms and Control Strategies , edited by DM Joel, J Gressel and LJ Musselman. Düsseldorf: Springer VDI Verlag. doi: 10.1007/978-3-642-38146-1_15.

2012

• Damayanti, L, Muñoz, J, Wicke, S, Symmank, L, Shaw, B, Frahm, J-P, and Quandt, D. 2012. “Common but new: Bartramia rosamrosiae, a 'new' widespread species of apple mosses (Bartramiales, Bryophytina) from the Mediterranean and western North America.” Phytotaxa, № 73: 37–59.

2011

• Wicke, S, Costa, A, Muñoz, J, and Quandt, D. 2011. “Restless 5S: The re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants.” Molecular Phylogenetics and Evolution, № 61 (2): 321–332. doi: 10.1016/j.ympev.2011.06.023.
• Wicke, S, Schneeweiss, GM, dePamphilis, CW, Müller, KF, and Quandt, D. 2011. “The evolution of the plastid chromosome in land plants: gene content, gene order, gene function.” Plant Molecular Biology, № 76 (3-5): 273–297. doi: 10.1007/s11103-011-9762-4.

2010

• Preußing, M, Olsson, S, Schäfer-Verwimp, A, Wickett, NJ, Wicke, S, Quandt, D, and Nebel, M. 2010. “New insights in the evolution of the liverwort family Aneuraceae (Metzgeriales, Marchantiophyta), with emphasis on the genus Lobatiriccardia.” Taxon, № 59 (5): 1424–1440.

2009

• Wicke, S, and Quandt, D. 2009. “Universal primers for the amplification of the plastid trnK/matK region in land plants.” Anales del Jardín Botánico de Madrid, № 66 (2): 285–288. doi: 10.3989/ajbm.2231.