Dr. Aaron Scherzinger

Research Assistant
© Uni MS

Tel: +49 251 83 - 32704
scherzinger(AT)wwu.de

University of Münster
Department of Computer Science
Einsteinstrasse 62
D-48149 Münster

Office 610
Consultation hour: by appointment

 

  • Research Foci

    • Biomedical Image Processing and Analysis
    • Pattern Recognition and Machine Learning
    • Scientific Visualization and Computer Graphics

  • Doctoral AbstractThesis

    Data Exploration in Natural Sciences using Machine Learning and Scientific Visualization

    Supervisors
    Doctoral Subject
    Informatik
    Doctoral Degree
    Dr. rer. nat.
    Awarded by
    Department 10 – Mathematics and Computer Science

  • Honors

    SciVis Contest Award – IEEE VIS: Visualization & Visual Analytics

  • Teaching

    • Projektseminar: Capstone Project: Barista [106120]
      (in cooperation with Prof. Dr. Benjamin Risse, Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dominik Drees)

    • Seminar: Seminar: Deep Learning [104121]
      (in cooperation with Prof. Dr. Benjamin Risse, Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dr. Dimitri Berh)
    • Projektseminar: Capstone Project: Barista [104120]
      (in cooperation with Prof. Dr. Benjamin Risse, Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dominik Drees)
    • Projektseminar: Capstone Project: Towards Smart 3D Printing [104123]
      (in cooperation with Prof. Dr. Benjamin Risse)

    • Seminar: Seminar "Machine Learning and Deep Learning" [102117]
      (in cooperation with Prof. Dr. Benjamin Risse, Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dr. Dimitri Berh)
    • Projektseminar: Literary Studies [102116]
      (in cooperation with Prof. Dr. Benjamin Risse, Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dominik Drees)

    • Seminar: Seminar "Machine Learning and Deep Learning" [100122]
      (in cooperation with Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dr. Dimitri Berh)
    • Projektseminar: Capstone Project: Barista - A Rapid Prototyping Tool for Neural Networks [100121]
      (in cooperation with Prof. Dr. Xiaoyi Jiang, Sören Klemm, Dominik Drees)

    • Vorlesung: Data Structures and Algorithms [108381]
      (in cooperation with )
    • Projektseminar: Capstone Project: Barista - A Rapid Prototyping Tool for Neural Networks [108414]
      (in cooperation with Prof. Dr. Xiaoyi Jiang, Sören Klemm)
    • Tutorial Algorithms and Data Structures [108382]
      (in cooperation with )

    • Projektseminar: Capstone Project "Development of a Rapid Prototyping Environment for Training and Testing Neural Networks" [106268]
      (in cooperation with Prof. Dr. Xiaoyi Jiang)

    • Vorlesung: Data Structures and Algorithms [104160]
      (in cooperation with )
    • Projektseminar: Capstone Project "IEEE VisContest 2016" [104167]
      (in cooperation with Dr. Tobias Brix, Prof. Dr. Xiaoyi Jiang, Claas Flint)
    • Tutorial Algorithms and Data Structures [104161]
      (in cooperation with )

  • Publications

    • Drees D, Scherzinger A, Hägerling R, Kiefer F, Jiang X. . ‘Scalable robust graph and feature extraction for arbitrary vessel networks in large volumetric datasets.’ BMC Bioinformatics 22, № 1: 346. doi: 10.1186/s12859-021-04262-w.

    • Drees D, Scherzinger A, Jiang X. . ‘GERoMe – a method for evaluating stability of graph extraction algorithms without ground truth.’ IEEE Access 7: 21744–21755. doi: 10.1109/ACCESS.2019.2898754.

    • Berh D, Scherzinger A, Otto N, Jiang X, Klämbt C, Risse B. . ‘Automatic non-invasive heartbeat quantification of Drosophila pupae.’ Computers in Biology and Medicine 93: 189–199.
    • Scherzinger Aaron. . Data Exploration in Natural Sciences using Machine Learning and Scientific Visualization Dissertation thesis, Universität Münster.
    • Klemm S, Scherzinger A, Drees D, Jiang X. . Barista - a graphical tool for designing and training deep neural networks. arXiv e-print:1802.04626: CoRR.
    • Dierkes C, Scherzinger A, Kiefer F. . ‘Three-Dimensional Visualization of the Lymphatic Vasculature.’ In Lymphangiogenesis - Methods and Protocols, edited by Oliver G, Kahn ML, 1–18. Heidelberg: Springer. doi: 10.1007/978-1-4939-8712-2_1.
    • Scherzinger A, Hugenroth P, Rüder M, Bogdan S, Jiang X. . ‘Multi-class Cell Segmentation using CNNs with F1-measure Loss Function.’ Contributed to the Proc. of 40th German Conference on Pattern Recognition (GCPR), Stuttgart.

    • Bian A, Scherzinger A, Jiang X. . ‘An enhanced multi-label random walk for biomedical image segmentation using statistical seed generation.’ Contributed to the Proc. of 18th Int. Confernce on Advanced Concepts for Intelligent Vision Systems (ACIVS), Antwerp, Belgium.
    • Hägerling R, Drees D, Scherzinger A, Dierkes C, Martin-Almedina S, Butz S, Gordon K, Schäfers M, Hinrichs K, Ostergaard P, Vestweber D, Goerge T, Mansour S, Jiang X, Mortimer P, Kiefer F. . ‘VIPAR, a quantitative approach to 3D-histopathology applied to lymphatic malformations.’ JCI Insight 2, № 16: e93424.
    • Scherzinger A, Klemm S, Berh D, Jiang X. . ‘CNN-based background subtraction for long-term in-vial FIM imaging.’ Contributed to the Proc. of 17th Int. Conf. on Computer Analysis of Images and Patterns (CAIP), Ystad, Sweden.
    • Scherzinger Aaron, Brix Tobias, Drees Dominik, Völker Andreas, Radkov Kiril, Santalidis Niko, Fieguth Alexander, Hinrichs Klaus H. . ‘Interactive Exploration of Cosmological Dark-Matter Simulation Data.’ IEEE Computer Graphics and Applications 37, № 2: 80–89.
    • Scherzinger Aaron, Brix Tobias, Hinrichs Klaus. . ‘An Efficient Geometric Algorithm for Clipping and Capping Solid Triangle Meshes.’ Contributed to the 12th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2017) - Volume 1: GRAPP, Porto, Portugal.
    • Drees D, Scherzinger A, Jiang X. . ‘GERoMe - A novel graph extraction robustness measure.’ Contributed to the Proc. of Int. Workshop on Graph-Based Representations in Pattern Recognition (GbR), Anacapri, Italy.
    • Seifert R, Scherzinger A, Kiefer F, Hermann S, Jiang X, Schäfers M. . ‘Statistical permutation-based artery mapping (SPAM): A novel approach to evaluate imaging signals in the vessel wall.’ BMC Medical Imaging 17, № 1: 36:1–36:11.

    • Scherzinger A, Kleene F, Dierkes C, Kiefer F, Hinrichs KH, Jiang X. . ‘Automated Segmentation of Immunostained Cell Nuclei in 3D Ultramicroscopy Images.’ Contributed to the Proc. of 38th German Conference on Pattern Recognition (GCPR), Hannover, Germany.

    • Brix Tobias, Scherzinger Aaron, Völker Andreas, Hinrichs Klaus. . ‘Interactive Position-dependent Customization of Transfer Function Classification Parameters in Volume Rendering.’ Contributed to the Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2015, Chester, England.
    • Prätorius Manuel, Scherzinger Aaron, Hinrichs Klaus. . ‘SKInteract: An on-body interaction system based on skin-texture recognition.’ Contributed to the 15th IFIP TC 13 International Conference on Human–Computer Interaction, INTERACT 2015, Bamberg, Deutschland. doi: 10.1007/978-3-319-22723-8_34.
    • Scherzinger Aaron, Brix Tobias, Drees Dominik, Völker Andreas, Radkov Kiril, Santalidis Niko, Fieguth Alexander, Hinrichs Klaus H. . ‘Visualize the Universe: Interactive Exploration of Cosmological Dark Matter Simulation Data.’ Contributed to the IEEE Visualization Conference 2015 October 25-30, Chicago, Il, USA.