Dr. Jan Ernsting

Dr. Jan Ernsting

Heisenbergstr. 2
48149 Münster

Academic Profile

  • Research Foci

    • Biomedical Imaging
    • Robust Uncertainty Estimation

  • CV

    Academic Education

    Promotionsstudium, Computer Vision & Machine Learning Systems Gruppe (Prof. Benjamin Risse)
    Promotionsstudium, Medical Machine Learning Lab (Prof. Tim Hahn)
    Master of Science (Informatik), Universität Münster
    Bachelor of Science (Informatik), Universität Münster

    Honors

    Dissertation prize of the Faculty of Medicine – University of Münster
    Paper of the Month – Medizinische Fakultät der Universität Münster
    Forschungsförderpreis – Maria-Möller-Stiftung

  • Publications

    • Moia Stefano , Wang Hao-Ting , Heinsfeld S. Anibal , Jarecka Dorota , Yang Fang Yu , Heunis Stephan , Svanera Michele , Leener De Benjamin , Gondová Andrea , Kim Sin , Basavaraj Arshitha , Bayer M.M. Johanna , Bayrak G. Roza , Bazin Pierre-Louis , Bilgin Poyraz Isil , Bollmann Steffen , Borek Daniel , Borghesani Valentina , Cao Trang , Chen Gang , Vega La De Alejandro , Dresbach Sebastian , Ehses Philipp , Ernsting Jan , Esteves Inês , Ferrante Oscar , Garner G. Kelly , Gau Rémi , Germani Elodie , Ghafari Tara , Ghosh S. Satrajit , Goodale E. Sarah , Praag van Gould D. Cassandra , Guay Samuel , Gulban Faruk Omer , Halchenko O. Yaroslav , Hanke Michael , Herholz Peer , Heuer Katja , Hoffstaedter Felix , Huang Ruoqi , Huber Renzo , Jensen Ole , Keeratimahat Kan , Kosciessa Q. Julian , Lukic Sladjana , Magielse Neville , Markiewicz J. Christopher , Martin G. Caroline , Maumet Camille , Menacher Anna , Mentch Jeff , Mönch Christian , More Shammi , Muller-Rodriguez Leonardo , Nastase A. Samuel , Nicolaisen-Sobesky Eliana , Nielson M. Dylan , Nolan R. Christopher , Paugam François , Pinheiro-Chagas Pedro , Pinho Luísa Ana , Pizzuti Alessandra , Poldrack Benjamin , Poser A. Benedikt , Rocca Roberta , Sanz-Robinson Jacob , Sarink Kelvin , Sitek R. Kevin , Spychala Nadine , Stirnberg Rüdiger , Szczepanik Michał , Torabi Mohammad , Toro Roberto , Urchs G.W. Sebastian , Valk L. Sofie , Wagner S. Adina , Waite K. Laura , Waite Q. Alexander , Waller Lea , Wishard J. Tyler , Wu Jianxiao , Zhou Yuchen , Bijsterbosch D. Janine , Community Physiopy The. . ‘Proceedings of the OHBM Brainhack 2022.’ Aperture Neuro 2014//4. doi: 10.52294/001c.92760.
    • Porschen C; Ernsting J; Brauckmann P; Weiss R; Würdemann T; Booke H; Amini W; Maidowski L; Risse B; Hahn T; Groote T. pyAKI - An Open Source Solution to Automated KDIGO classification https://arxiv.org. doi: 10.48550/arXiv.2401.12930.
    • Fisch L.; Zumdick S.; Barkhau C.; Emden D.; Ernsting J.; Leenings R.; Sarink K.; Winter N.R.; Risse B.; Dannlowski U.; Hahn T. . ‘deepbet: Fast brain extraction of T1-weighted MRI using Convolutional Neural Networks.’ Computers in Biology and Medicine 179. doi: 10.1016/j.compbiomed.2024.108845.
    • Fisch L.; Heming M.; Schulte-Mecklenbeck A.; Gross C.C.; Zumdick S.; Barkhau C.; Emden D.; Ernsting J.; Leenings R.; Sarink K.; Winter N.R.; Dannlowski U.; Wiendl H.; Hörste G.M.z.; Hahn T. . ‘GateNet: A novel neural network architecture for automated flow cytometry gating.’ Computers in Biology and Medicine 179. doi: 10.1016/j.compbiomed.2024.108820.
    • Winter R. Nils , Blanke Julian , Leenings Ramona , Ernsting Jan , Fisch Lukas , Sarink Kelvin , Barkhau Carlotta , Emden Daniel , Thiel Katharina , Flinkenflügel Kira , Winter Alexandra , Goltermann Janik , Meinert Susanne , Dohm Katharina , Repple Jonathan , Gruber Marius , Leehr J. Elisabeth , Opel Nils , Grotegerd Dominik , Redlich Ronny , Nitsch Robert , Bauer Jochen , Heindel Walter , Gross Joachim , Risse Benjamin , Andlauer M. F. Till , Forstner J. Andreas , Nöthen M. Markus , Rietschel Marcella , Hofmann G. Stefan , Pfarr Julia-Katharina , Teutenberg Lea , Usemann Paula , Thomas-Odenthal Florian , Wroblewski Adrian , Brosch Katharina , Stein Frederike , Jansen Andreas , Jamalabadi Hamidreza , Alexander Nina , Straube Benjamin , Nenadić Igor , Kircher Tilo , Dannlowski Udo , Hahn Tim. . ‘A Systematic Evaluation of Machine Learning–Based Biomarkers for Major Depressive Disorder.’ JAMA Psychiatry 2024/4/81. doi: 10.1001/jamapsychiatry.2023.5083.

  • Scientific Talk

    • Ernsting, Jan : “An uncertainty-aware, shareable, and transparent neural network architecture for brain-age modeling”. Virtual St. Andrews-Bonn meeting: Early career focus - focused on techniques rather than results, Online, .