Research Foci
- Biomedical Imaging
- Robust Uncertainty Estimation
CV
Academic Education
- Promotionsstudium, Computer Vision & Machine Learning Systems Gruppe (Prof. Benjamin Risse)
- Promotionsstudium, Medical Machine Learning Lab (Prof. Tim Hahn)
- Master of Science (Informatik), Universität Münster
- Bachelor of Science (Informatik), Universität Münster
Honors
- Promotionspreis – Medizinische Fakultät der Universität Münster
- Paper of the Month – Medizinische Fakultät der Universität Münster
- Forschungsförderpreis – Maria-Möller-Stiftung
Publications
- Stefano, Moia, Hao-Ting, Wang, Anibal, Heinsfeld S., Dorota, Jarecka, Yu, Yang Fang, Stephan, Heunis, Michele, Svanera, Benjamin, Leener De, Andrea, Gondová, Sin, Kim, Arshitha, Basavaraj, Johanna, Bayer M.M., Roza, Bayrak G., Pierre-Louis, Bazin, Isil, Bilgin Poyraz, Steffen, Bollmann, Daniel, Borek, Valentina, Borghesani, Trang, Cao, Gang, Chen, Alejandro, Vega La De, Sebastian, Dresbach, Philipp, Ehses, Jan, Ernsting, Inês, Esteves, Oscar, Ferrante, Kelly, Garner G., Rémi, Gau, Elodie, Germani, Tara, Ghafari, Satrajit, Ghosh S., Sarah, Goodale E., Cassandra, Praag van Gould D., Samuel, Guay, Omer, Gulban Faruk, Yaroslav, Halchenko O., Michael, Hanke, Peer, Herholz, Katja, Heuer, Felix, Hoffstaedter, Ruoqi, Huang, Renzo, Huber, Ole, Jensen, Kan, Keeratimahat, Julian, Kosciessa Q., Sladjana, Lukic, Neville, Magielse, Christopher, Markiewicz J., Caroline, Martin G., Camille, Maumet, Anna, Menacher, Jeff, Mentch, Christian, Mönch, Shammi, More, Leonardo, Muller-Rodriguez, Samuel, Nastase A., Eliana, Nicolaisen-Sobesky, Dylan, Nielson M., Christopher, Nolan R., François, Paugam, Pedro, Pinheiro-Chagas, Ana, Pinho Luísa, Alessandra, Pizzuti, Benjamin, Poldrack, Benedikt, Poser A., Roberta, Rocca, Jacob, Sanz-Robinson, Kelvin, Sarink, Kevin, Sitek R., Nadine, Spychala, Rüdiger, Stirnberg, Michał, Szczepanik, Mohammad, Torabi, Roberto, Toro, Sebastian, Urchs G.W., Sofie, Valk L., Adina, Wagner S., Laura, Waite K., Alexander, Waite Q., Lea, Waller, Tyler, Wishard J., Jianxiao, Wu, Yuchen, Zhou, Janine, Bijsterbosch D., and The, Community Physiopy. . “Proceedings of the OHBM Brainhack 2022.” Aperture Neuro, № 2014//4 doi: 10.52294/001c.92760.
- Porschen, C, Ernsting, J, Brauckmann, P, Weiss, R, Würdemann, T, Booke, H, Amini, W, Maidowski, L, Risse, B, Hahn, T, and Groote, T. . “pyAKI - An Open Source Solution to Automated KDIGO classification.” https://arxiv.org doi: 10.48550/arXiv.2401.12930.
- Fisch, L., Zumdick, S., Barkhau, C., Emden, D., Ernsting, J., Leenings, R., Sarink, K., Winter, N.R., Risse, B., Dannlowski, U., and Hahn, T. . “deepbet: Fast brain extraction of T1-weighted MRI using Convolutional Neural Networks.” Computers in Biology and Medicine, № 179 doi: 10.1016/j.compbiomed.2024.108845.
- L., Fisch, M., Heming, A., Schulte-Mecklenbeck, C.C., Gross, S., Zumdick, C., Barkhau, D., Emden, J., Ernsting, R., Leenings, K., Sarink, N.R., Winter, U., Dannlowski, H., Wiendl, G.M.z., Hörste, and T., Hahn. . “GateNet: A novel neural network architecture for automated flow cytometry gating.” Computers in Biology and Medicine, № 179 doi: 10.1016/j.compbiomed.2024.108820.
- Nils, Winter R., Julian, Blanke, Ramona, Leenings, Jan, Ernsting, Lukas, Fisch, Kelvin, Sarink, Carlotta, Barkhau, Daniel, Emden, Katharina, Thiel, Kira, Flinkenflügel, Alexandra, Winter, Janik, Goltermann, Susanne, Meinert, Katharina, Dohm, Jonathan, Repple, Marius, Gruber, Elisabeth, Leehr J., Nils, Opel, Dominik, Grotegerd, Ronny, Redlich, Robert, Nitsch, Jochen, Bauer, Walter, Heindel, Joachim, Gross, Benjamin, Risse, Till, Andlauer M. F., Andreas, Forstner J., Markus, Nöthen M., Marcella, Rietschel, Stefan, Hofmann G., Julia-Katharina, Pfarr, Lea, Teutenberg, Paula, Usemann, Florian, Thomas-Odenthal, Adrian, Wroblewski, Katharina, Brosch, Frederike, Stein, Andreas, Jansen, Hamidreza, Jamalabadi, Nina, Alexander, Benjamin, Straube, Igor, Nenadić, Tilo, Kircher, Udo, Dannlowski, and Tim, Hahn. . “A Systematic Evaluation of Machine Learning–Based Biomarkers for Major Depressive Disorder.” JAMA Psychiatry, № 2024/4/81 doi: 10.1001/jamapsychiatry.2023.5083.
- Hahn, T, Winter, NR, Ernsting, J, Gruber, M, Mauritz, MJ, Fisch, L, Leenings, R, Sarink, K, Blanke, J, Holstein, V, Emden, D, Beisemann, M, Opel, N, Grotegerd, D, Meinert, S, Witt, S, Heindel, W, Nöthen, MM, Rietschel, M, Kircher, T, Forstner, AJ, Jansen, A, Nenadic, I, Andlauer, TFM, Müller-Myhsok, B, van den, Heuvel MP, Walter, M, Dannlowski, U, Jamalabadi, H, and Repple, J. . “Genetic, individual, and familial risk correlates of brain network controllability in major depressive disorder.” Molecular Psychiatry, № 28 (3): 1057–1063. doi: 10.1038/s41380-022-01936-6.
- Hahn, Tim, Jamalabadi, Hamidreza, Nozari, Erfan, Winter, Nils R., Ernsting, Jan, Gruber, Marius, Mauritz, Marco J., Grumbach, Pascal, Fisch, Lukas, Leenings, Ramona, Sarink, Kelvin, Blanke, Julian, Vennekate, Leon Kleine, Emden, Daniel, Opel, Nils, Grotegerd, Dominik, Enneking, Verena, Meinert, Susanne, Borgers, Tiana, Klug, Melissa, Leehr, Elisabeth J., Dohm, Katharina, Heindel, Walter, Gross, Joachim, Dannlowski, Udo, Redlich, Ronny, and Repple, Jonathan. . “Towards a network control theory of electroconvulsive therapy response.” PNAS Nexus, № 2 (2) doi: 10.1093/pnasnexus/pgad032.
- Hahn, T, Ernsting, J, Winter, NR, Holstein, V, Leenings, R, Beisemann, M, Fisch, L, Sarink, K, Emden, D, Opel, N, Redlich, R, Repple, J, Grotegerd, D, Meinert, S, Hirsch, JG, Niendorf, T, Endemann, B, Bamberg, F, Kröncke, T, Bülow, R, Völzke, H, von Stackelberg, O, Sowade, RF, Umutlu, L, Schmidt, B, Caspers, S, Kugel, H, Kircher, T, Risse, B, Gaser, C, Cole, JH, Dannlowski, U, and Berger, K. . “An Uncertainty-Aware, Shareable and Transparent Neural Network Architecture for Brain-Age Modeling.” Science advances, № 8 (1): eabg9471–eabg9471. doi: 10.1126/sciadv.abg9471.
- Leenings, R, Winter, NR, Plagwitz, L, Holstein, V, Ernsting, J, Sarink, K, Fisch, L, Steenweg, J, Kleine-Vennekate, L, Gebker, J, Emden, D, Grotegerd, D, Opel, N, Risse, B, Jiang, X, Dannlowski, U, and Hahn, T. . “PHOTONAI-A Python API for rapid machine learning model development.” PloS one, № 16 doi: 10.1371/journal.pone.0254062.
- Hahn, T, Fisch, L, Ernsting, J, Winter, NR, Leenings, R, Sarink, K, Emden, D, Kircher, T, Berger, K, and Dannlowski, U. . “From “Loose Fitting” to High-Performance, Uncertainty-Aware Brain-Age Modelling.” Brain, № 144 (3) e31. doi: 10.1093/brain/awaa454.
- Sandmann, Sarah, Karimi, Mohsen, de Graaf, Aniek O, Rohde, Christian, Göllner, Stefanie, Varghese, Julian, Ernsting, Jan, Walldin, Gunilla, van der Reijden, Bert A, Müller-Tidow, Carsten, Malcovati, Luca, Hellström-Lindberg, Eva, Jansen, Joop H, and Dugas, Martin. . “appreci8: a pipeline for precise variant calling integrating 8 tools.” Bioinformatics, № 2018/24/34 doi: 10.1093/bioinformatics/bty518.
- Brix, TJ, Bruland, P, Sarfraz, S, Ernsting, J, Neuhaus, P, Storck, M, Doods, J, Ständer, S, and Dugas, M. . “ODM Data Analysis-A tool for the automatic validation, monitoring and generation of generic descriptive statistics of patient data.” PloS one, № 13 doi: 10.1371/journal.pone.0199242.
Scientific Talk
- Ernsting, Jan : “An uncertainty-aware, shareable, and transparent neural network architecture for brain-age modeling”. Virtual St. Andrews-Bonn meeting: Early career focus - focused on techniques rather than results, Online, .
