• Articles
• Books (Monographs)
• Theses (Doctoral or Postdoctoral)

Articles

Research Articles (Journals)

• Fischer, Eberhard, Killmann, Dorothee, Gerlach, Johanna, Schütte, Claudia, Leh, Burkhard, Müller, Kai, and Quandt, Dietmar. 2024. “Hoefkenia hunsrueckensis, a New Genus and Species from Europe, and the Identity of Virescentia vogesiaca (F.W.Schultz ex Skuja) Necchi, D.C.Agostinho & M.L.Vis (Batrachospermales, Rhodophyta).” Diversity, № 16 (8) 473. doi: 10.3390/d16080473.
• Wiechers, S, Kösters, LM, Quandt, D, Borsch, T, Wicke, S, and Müller, KF. 2023. “BarKeeper – A versatile web framework to assemble, analyze, and manage DNA barcoding data and metadata.” Methods in Ecology and Evolution, № Early View doi: 10.1111/2041-210X.14047.
• Wolf, M, Zapf, K, Gupta, DK, Hiller, M, Árnason, Ú, and Janke, A. 2023. “The genome of the pygmy right whale illuminates the evolution of rorquals.” BMC Biology, № 21 (79) doi: 10.1186/s12915-023-01579-1.
• Wolf, Magnus, Greve, Carola, Schell, Tilman, Janke, Axel, Schmitt, Thomas, Pauls, Steffen U, Aspöck, Horst, and Aspöck, Ulrike. 2023. “The de novo genome of the Black-necked Snakefly (Venustoraphidia nigricollis Albarda, 1891): A resource to study the evolution of living fossils.” The Journal of heredity, № 115 (1): 112–119. doi: 10.1093/jhered/esad074.
• Wolf, M, de Jong, M, Halldórsson, SD, Árnason, Ú, and Janke, A. 2022. “Genomic Impact of Whaling in North Atlantic Fin Whales.” Molecular Biology and Evolution, № 39 (5) doi: 10.1093/molbev/msac094.
• Mašková, T, Phartyal, SS, Abedi, M, Bartelheimer, M, and Poschlod, P. 2022. “Soil moisture level and substrate type determine long-term seed lifespan in a soil seed bank.” Plant and Soil, № 477: 475–485. doi: 10.1007/s11104-022-05449-7.
• Bathe, M, Bartelheimer, M, and Asshoff, R. 2021. “Alltagsvorstellungen zum Platzen von Kirschen im Kontext der Modellkompetenz.” MNU Journal, № 74: 50–53.
• Ordon, K, Bartelheimer, M, and Asshoff, R. 2021. “Biology student teachers’ interest and self-efficacy in planning and conducting field trips after participation in a university course.” Environmental Education Research, № 27: 88–109. doi: 10.1080/13504622.2020.1849565.
• Kösters, LM, Wiechers, S, Lyko, P, Müller, KF, and Wicke, S. 2021. “WARPP - web application for the research of parasitic plants.” Plant Physiology, № 185: 1374–1380. doi: 10.1093/plphys/kiaa105.
• Asshoff, R, Bartelheimer, M, Kullmann, H, Kurtz, J, Meyer, EI, Müller, K, Scharsack, J, and Schütz, H-U. 2020. “Studierende in der Rolle von Exkursionsleiterinnen und Exkursionsleitern – Auswirkungen auf Interesse, Einstellungen und Selbstwirksamkeit.” Natur und Landschaft, № 6-2020: 269–275.
• Reisch, C, Meier, S, Schmid, C, and Bartelheimer, M. 2020. “Clonal diversity and genetic variation of the sedge Carex nigra in an alpine fen depend on soil nutrients.” PeerJ — the Journal of Life and Environmental Sciences, № 8 (e8887) doi: 10.7717/peerj.8887.
• Schlesak, S, Hedenäs, L, Nebel, M, and Quandt, D. 2019. “Addendum to Hypnum subcomplanatum Hedenäs, Schlesak, D. Quandt.” Bryophyte Diversity and Evolution, № 41 (1): 1–1.
• Stöver, BC, Wiechers, S, and Müller, KF. 2019. “JPhyloIO: A Java library for event-based reading and writing of different phylogenetic file formats through a common interface.” BMC Bioinformatics, № 20 (1): 402. doi: 10.1186/s12859-019-2982-3.
• Aly, R, Lati, R, Abu-Nassar, J, Ziadna, H, Achdari, G, von Muenchow, CS, Wicke, S, Bari, VK, and Eizenberg, H. 2019. “The weedy parasite Phelipanche aegyptiaca attacks Brassica rapa var. rapa L. for the first time in Israel.” Plant Disease, № 2019: 1. doi: 10.1094/PDIS-02-19-0285-PDN.
• Schlesak, S, Hedenäs, L, Nebel, M, and Quandt, D. 2018. “Cleaning a taxonomic dustbin: placing the European Hypnum species in a phylogenetic context!” Bryophyte Diversity and Evolution, № 40 (2): 37–54. doi: 10.11646/bde.40.2.3.
• Maul, K, Krug, M, Nickrent, DL, Müller, KF, Quandt, D, and Wicke, S. 2018. “Morphology, geographic distribution, and host preferences are poor predictors of phylogenetic relatedness in the mistletoe genus Viscum L.” Molecular Phylogenetics and Evolution, № 131: 106–115. doi: 10.1016/j.ympev.2018.10.041.
• Borsch, T, Flores-Olvera, H, Zumaya, S, and Müller, KF. 2018. “Pollen characters and DNA sequence data converge on a monophyletic genus Iresine (Amaranthaceae, Caryophyllales) and help to elucidate its species diversity.” Taxon, № 67: 944–976. doi: 10.12705/675.7.
• Poppinga, S, Westermeier, AS, Fleischmann, A, Müller, KF, and Speck, T. 2018. “Evolution of a sucker: Functional principles of traps in carnivorous bladderworts (Utricularia, Lentibulariaceae).” Atlas of Science, № 1
• Barrett, CF, Wicke, S, and Sass, C. 2018. “Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex.” New Phytologist, № 218 (3): 1192–1204. doi: 10.1111/nph.15072.
• Sattler, J, and Bartelheimer, M. 2018. “Root responses to legume plants integrate information on nitrogen availability and neighbour identity.” Basic and Applied Ecology, № 27: 51–60. doi: 10.1016/j.baae.2018.01.001.
• Wang, Y-H, Wicke, S, Wang, H, Jin, J-J, Chen, S-Y, Zhang, S-D, Li, D-Z, and Yi, T-S. 2018. “Plastid genome evolution in the early-diverging legume subfamily Cercidoideae (Fabaceae).” Frontiers in Plant Science, № 8: 138. doi: 10.3389/fpls.2018.00138.
• Westermeier, AS, Fleischmann, A, Müller, K, Schäferhoff, B, Rubach, C, Speck, T, and Poppinga, S. 2017. “Trap diversity and character evolution in carnivorous bladderworts (Utricularia, Lentibulariaceae).” Scientific Reports, № 7: 12052. doi: 10.1038/s41598-017-12324-4.
• Araya, Y, Bartelheimer, M, Valle, C, Crujeiras, R, and García-Baquero, G. 2017. “Does functional soil microbial diversity contribute to explain within-site plant beta-diversity in an alpine grassland and a dehesa meadow in Spain?” Journal of Vegetation Science, № 28: 1018–1027. doi: 10.1111/jvs.12557.
• Noben, S, Kessler, M, Quandt, D, Weigand, A, Wicke, S, Krug, M, and Lehnert, M. 2017. “Biogeography of the Gondwanan tree fern family Dicksoniaceae—A tale of vicariance, dispersal and extinction.” Journal of Biogeography, № 44 (11): 2648–2659. doi: 10.1111/jbi.13056.
• Barré, P, Stöver, BC, Müller, KF, and Steinhage, V. 2017. “LeafNet: A computer vision system for automatic plant species identification.” Ecological Informatics, № 40: 50–56. doi: 10.1016/j.ecoinf.2017.05.005.
• Levy, Karin E, Ashkenazy, H, Wicke, S, Pupko, T, and Mayrose, I. 2017. “TraitRateProp: A web server for the detection of trait-dependent evolutionary rate shifts in sequence sites.” Nucleic Acids Research, № 45 (1): W260–W264. doi: 10.1093/nar/gkx288.
• Levy, Karin E, Wicke, S, Pupko, T, and Mayrose, I. 2017. “An integrated model of phenotypic trait changes and site-specific sequence evolution.” Systematic Biology, № 66 (6): 917–933. doi: 10.1093/sysbio/syx032.
• Röschenbleck, J, Wicke, S, Weinl, S, Kudla, J, and Müller, KF. 2017. “Genus-wide screening reveals four distinct types of structural plastid genome organization in Pelargonium (Geraniaceae).” Genome Biology and Evolution, № 9 (1): 64–76. doi: 10.1093/gbe/evw271.
• Geiger, M.F., Astrin, J.J., Borsch, T., Burkhardt, U., Grobe, P., Hand, R., Hausmann, A., Hohberg, K., Krogmann, L., Lutz, M., Monje, C., Misof, B., Morinière, J., Müller, Kai F., Pietsch, S., Quandt, Dietmar, Rulik, B., Scholler, M., Traunspurger, W., Haszprunar, G., and Wägele, W. 2016. “How to tackle the molecular species inventory for an industrialized nation-lessons from the first phase of the German Barcode of Life initiative GBOL (2012-2015).” Genome, № 59: 661–670.
• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Bellot, S, and Schneeweiss, GM. 2016. “Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants.” Proceedings of the National Academy of Sciences of the United States of America, № 113 (32): 9045–9050. doi: 10.1073/pnas.1607576113.
• Feng, YL, Wicke, S, Li, JW, Han, Y, Lin, CS, Li, DZ, Zhou, TT, Huang, WC, Huang, LQ, and Jin, XH. 2016. “Lineage-specific reductions of plastid genomes in an orchid tribe with partially and fully mycoheterotrophic species.” Genome Biology and Evolution, № 8 (7): 2164–2175. doi: 10.1093/gbe/evw144.
• Bartelheimer, M, and Poschlod, P. 2016. “Ellenberg's water table experiment put to the test: species optima along a hydrological gradient.” Oecologia, № 181: 1163–1172. doi: 10.1007/s00442-016-3624-3.
• Bartelheimer, M, and Poschlod, P. 2016. “Functional characterizations of Ellenberg Indicator Values - a review on ecophysiological determinants.” Functional Ecology, № 30: 506–516. doi: 10.1111/1365-2435.12531.
• Cusimano, N, and Wicke, S. 2016. “Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae.” New Phytologist, № 210 (2): 680–693. doi: 10.1111/nph.13784.
• Bitard-Feildel, Tristan, Heberlein, Magdalena, Bornberg-Bauer, Erich, and Callebaut, Isabelle. 2015. “Detection of orphan domains in <i>Drosophila</i> using "hydrophobic cluster analysis".” Biochimie, № 119 doi: 10.1016/j.biochi.2015.02.019.
• Kilian, N, Henning, T, Plitzner, P, Müller, A, Güntsch, A, Stöver, BC, Müller, KF, Berendsohn, WG, and Borsch, T. 2015. “Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens.” Database, № 2015: bav094. doi: 10.1093/database/bav094.
• Höpfner, I, Beyschlag, W, Bartelheimer, M, Werner, C, and Unger, S. 2015. “Role of mycorrhization and nutrient availability in competitive interactions between the grassland species Plantago lanceolata and Hieracium pilosella.” Plant Ecology, № 216: 887–899. doi: 10.1007/s11258-015-0476-6.
• Szövényi, P, Frangedakis, E, Ricca, M, Quandt, D, Wicke, S, and Langdale, JA. 2015. “Establishment of Anthoceros agrestis as a model species for studying the biology of hornworts.” BMC Plant Biology, № 15: 98. doi: 10.1186/s12870-015-0481-x.
• Schmid, C, Bauer, S, and Bartelheimer, M. 2015. “Should I stay or should I go? Roots segregate in response to competition intensity.” Plant and Soil, № 391: 283–291. doi: 10.1007/s11104-015-2419-3.
• Milutinović, B, Fritzlar, S, and Kurtz, J. 2014. “Increased Survival in the Red Flour Beetle after Oral Priming with Bacteria-Conditioned Media.” Journal of Innate Immunity, № 6 (3): 306–314. doi: 10.1159/000355211.
• Bartelheimer, M, Schmid, C, Storf, J, Hell, K, and Bauer, S. 2015. “Interspecific competition in Arabidopsis thaliana – a knowledge gap is starting to close.” Progress in Botany, № 76: 303–319. doi: 10.1007/978-3-319-08807-5_12.
• Fleischmann, A, Michael, T, Rivadavia, F, Wang, W, Temsch, E, Greilhuber, J, Müller, KF, and Heubl, G. 2014. “Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms.” Annals of Botany, № 114 (8): 1651–1663. doi: 10.1093/aob/mcu189.
• Wicke, S, Schäferhoff, B, dePamphilis, CW, and Müller, KF. 2014. “Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae.” Molecular Biology and Evolution, № 31 (3): 529–545. doi: 10.1093/molbev/mst261.
• Röschenbleck, J, Albers, F, Müller, KF, Weinl, S, and Kudla, J. 2014. “Phylogenetics, character evolution and a subgeneric revision of the genus Pelargonium (Geraniaceae).” Phytotaxa, № 159 (2): 31–76.
• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Wickett, NJ, Zhang, Y, Renner, SS, and Schneeweiss, GM. 2013. “Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family.” The Plant Cell, № 25: 3711–3725. doi: 10.1105/tpc.113.113373.
• Fischer, E, Schäferhoff, B, and Müller, KF. 2013. “The phylogeny of Linderniaceae - The new genus Linderniella, and new combinations within Bonnaya, Craterostigma, Lindernia, Torenia and Vandellia.” Willdenowia, № 43: 209–238. doi: 10.3372/wi.43.43201.
• Testroet, P, Quandt, D, Santos-Guerra, A, Müller, KF, and Lobin, W. 2013. “Population genetics and conservation of Sideroxylon canariense (Sapotaceae) on the Canary Islands.” Vieraea, № 41: 295–308.
• Abedi, M, Bartelheimer, M, and Poschlod, P. 2014. “Effects of substrate type, moisture and its interaction on soil seed survival of three Rumex species.” Plant and Soil, № 374: 485–495. doi: 10.1007/s11104-013-1903-x.
• Bartelheimer, M, and Poschlod, P. 2014. “The response of grassland species to nitrate versus ammonium coincides with their pH optima.” Journal of Vegetation Science, № 25: 760–770. doi: 10.1111/jvs.12124.
• Schmid, C, Bauer, S, Müller, B, and Bartelheimer, M. 2013. “Belowground neighbor perception in Arabidopsis thaliana studied by transcriptome analysis: roots of Hieracium pilosella cause biotic stress.” Frontiers in Plant Science, № 4: 296. doi: 10.3389/fpls.2013.00296.
• Müller, B, and Bartelheimer, M. 2013. “Interspecific competition in Arabidopsis thaliana: root hairs are important for competitive effect, but not for competitive response.” Plant and Soil, № 371: 167–177. doi: 10.1007/s11104-013-1675-3.
• Damayanti, L, Muñoz, J, Wicke, S, Symmank, L, Shaw, B, Frahm, J-P, and Quandt, D. 2012. “Common but new: Bartramia rosamrosiae, a 'new' widespread species of apple mosses (Bartramiales, Bryophytina) from the Mediterranean and western North America.” Phytotaxa, № 73: 37–59.
• M*, Abedi, contributing), Bartelheimer M* (*equally, and P, Poschlod. 2013. “Aluminium toxic effects on seedling root survival affect plant composition along soil reaction gradients – a case study in dry sandy grasslands.” Journal of Vegetation Science, № 24: 1074–1085. doi: 10.1111/jvs.12016.
• Fischer, E, Schäferhoff, B, and Müller, KF. 2012. “The new monotypic genus Bardotia (Orobanchaceae) from Madagascar and remarks on the phylogenetic relationships of the African and Madagascan genera Micrargeria, Parastriga, Radamaea, Rhamphicarpa and Sieversandreas.” Phytotaxa, № 46: 19–33.
• Barniske, A, Borsch, T, Müller, KF, Krug, M, Worberg, A, Neinhuis, C, and Quandt, D. 2012. “Phylogenetics of early branching eudicots: comparing phylogenetic signal accross chloroplast introns, spacers, and genes.” Journal of Systematics and Evolution, № 50: 85–108. doi: 10.1111/j.1759-6831.2012.00181.x.
• Naumann, J, Symmank, L, Samain, M, Müller, KF, Neinhuis, C, dePamphilis, CW, and Wanke, S. 2011. “Chasing the hare - Evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level.” BMC Evolutionary Biology, № 11: 357. doi: 10.1186/1471-2148-11-357.
• KF, Müller. 2011. “McPherson S. (ed. by Fleischmann A. and Robinson A.): Carnivorous plants and their habitats. (Book review).” Willdenowia, № 42: 387–388.
• Wicke, S, Costa, A, Muñoz, J, and Quandt, D. 2011. “Restless 5S: The re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants.” Molecular Phylogenetics and Evolution, № 61 (2): 321–332. doi: 10.1016/j.ympev.2011.06.023.
• Korotkova, N, Borsch, T, Quandt, D, Taylor, NP, Müller, KF, and Barthlott, W. 2011. “What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae).” American Journal of Botany, № 98 (9): 1549–1572. doi: 10.3732/ajb.1000502.
• Wicke, S, Schneeweiss, GM, dePamphilis, CW, Müller, KF, and Quandt, D. 2011. “The evolution of the plastid chromosome in land plants: gene content, gene order, gene function.” Plant Molecular Biology, № 76 (3-5): 273–297. doi: 10.1007/s11103-011-9762-4.
• Schäferhoff, B, Fleischmann, A, Fischer, E, Albach, DC, Borsch, T, Heubl, G, and Müller, KF. 2010. “Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences.” BMC Evolutionary Biology, № 10 doi: 10.1186/1471-2148-10-352.
• Simmons, MP, Müller, KF, and Norton. 2010. “Alignment of, and phylogenetic inference from, random sequences: the susceptibility of alternative methods to artifactual resolution and support.” Molecular Phylogenetics and Evolution, № 57 (3): 1004–1016. doi: 10.1016/j.ympev.2010.09.004.
• Preußing, M, Olsson, S, Schäfer-Verwimp, A, Wickett, NJ, Wicke, S, Quandt, D, and Nebel, M. 2010. “New insights in the evolution of the liverwort family Aneuraceae (Metzgeriales, Marchantiophyta), with emphasis on the genus Lobatiriccardia.” Taxon, № 59 (5): 1424–1440.
• Fleischmann, A, Schäferhoff, B, Heubl, G, Rivadavia, F, Barthlott, W, and Müller, KF. 2010. “Phylogenetics and character evolution in the carnivorous plant genus Genlisea A. St.-Hil. (Lentibulariaceae).” Molecular Phylogenetics and Evolution, № 56 (2): 768–783. doi: 10.1016/j.ympev.2010.03.009.
• Simmons, MP, Webb, CT, and Müller, KF. 2010. “The deterministic effects of alignment bias in phylogenetic inference.” Cladistics, № 27 (4): 402–416. doi: 10.1111/j.1096-0031.2010.00333.x.
• Simmons, MP, Zhang, LB, and Müller, KF. 2010. “Phylogenetic inference using non-redundant coding of dependent characters vs. alternative approaches when applied to protein-coding genes.” Cladistics, № 27 (2): 186–196. doi: 10.1111/j.1096-0031.2010.00327.x.
• Stöver, BC, and Müller, KF. 2010. “TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.” BMC Bioinformatics, № 11: 7. doi: 10.1186/1471-2105-11-7.
• Müller, KF, and Albach, DC. 2010. “Evolutionary rates in Veronica L. (Plantaginaceae): Disentangling the influence of life history and breeding system.” Journal of Molecular Evolution, № 70 (1): 44–56. doi: 10.1007/s00239-009-9307-5.
• Bartelheimer, M, Gowing, D, and Silvertown, J. 2010. “Explaining hydrological niches: the decisive role of below-ground competition in two closely related Senecio species.” Journal of Ecology, № 98: 126–136. doi: 10.1111/j.1365-2745.2009.01598.x.
• Schäferhoff, B, Müller, KF, and Borsch, T. 2009. “Caryophyllales phylogenetics: disentangling Phytolaccaceae and Molluginaceae and description of Microteaceae as a new isolated family.” Willdenowia, № 39: 209–228.
• Wicke, S, and Quandt, D. 2009. “Universal primers for the amplification of the plastid trnK/matK region in land plants.” Anales del Jardín Botánico de Madrid, № 66 (2): 285–288. doi: 10.3989/ajbm.2231.
• Simmons, MP, Müller, KF, and Webb, CT. 2008. “The relative sensitivity of different alignment methods and character codings in sensitivity analysis.” Cladistics, № 24 (6): 1039–1050. doi: 10.1111/j.1096-0031.2008.00230.x.
• Beck, SG, Fleischmann, A, Huaylla, H, Müller, KF, and Borsch, T. 2008. “Pinguicula chuquisacensis (Lentibulariaceae), a new species from the Bolivian Andes, and first insights on phylogenetic relationships among South American Pinguicula.” Willdenowia, № 38: 201–212.
• Wahrmund U, Rein T, Frahm, Müller KF, and Groth-Malonek M, Knoop V. 2008. “Fifty mosses on five trees: Comparing phylogenetic information in three types of non-coding mitochondrial DNA and two chloroplast loci.” Plant Systematics and Evolution, № 282: 241–255. doi: 10.1007/s00606-008-0043-x.
• Bartelheimer, M, Steinlein, T, and Beyschlag, W. 2008. “15N-nitrate-labelling demonstrates a size symmetric competitive effect on belowground resource uptake.” Plant Ecology, № 199: 243–253. doi: 10.1007/s11258-008-9429-7.
• Wall, PK, Leebens-Mack, J, Müller, KF, Field, D, Altman, NS, and dePamphilis, CW. 2007. “PlantTribes: A gene and gene family resource for comparative genomics in plants.” Nucleic Acids Research, № 36 (IS 1): D970–D976. doi: 10.1093/nar/gkm972.
• Jansen RK, Cai Z, Daniell H, Raubeson L, DePamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee, Peery R, McNeal JR, and Kuehl JV, Boore JL. 2007. “Analysis of 81 Genes from 64 Chloroplast Genomes Resolves Relationships in Angiosperms and Identifies Genome-Scale Evolutionary Patterns.” Proceedings of the National Academy of Sciences of the United States of America, № 104 (49): 19369–19374. doi: 10.1073/pnas.0709121104.
• Barakat, A, Müller, KF, and Sáenz, de Miera. 2007. “Molecular evolutionary analysis of the Arabidopsis L7 ribosomal protein gene family.” Gene, № 403: 143–150. doi: 10.1016/j.gene.2007.08.002.
• Simmons, MP, Müller, KF, and Norton, AP. 2007. “The relative performance of indel-coding methods in simulations.” Molecular Phylogenetics and Evolution, № 44: 724–740. doi: 10.1016/j.ympev.2007.04.001.
• Weigelt, A, Schumacher, J, Walther, T, Bartelheimer, M, Steinlein, T, and Beyschlag, W. 2007. “On the hyperbolic competition model – Reply.” Journal of Ecology, № 95: 601–602. doi: 10.1111/j.1365-2745.2007.01260.x.
• Simmons MP, Zhang, and Webb CT, Müller KF. 2007. “A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference.” Molecular Phylogenetics and Evolution, № 42: 528–542. doi: 10.1016/j.ympev.2006.08.008.
• Weigelt, A, Schumacher, J, Walther, T, Bartelheimer, M, Steinlein, T, and Beyschlag, W. 2007. “Identifying mechanisms of competition in multi-species communities.” Journal of Ecology, № 95: 53–64. doi: 10.1111/j.1365-2745.2006.01198.x.
• Müller, K, Borsch, T, Legendre, L, Porembski, S, and Barthlott, W. 2006. “Recent progress in understanding the evolution of Lentibulariaceae.” Plant Biology, № 8: 748–757. doi: 10.1055/s-2006-924706.
• Greilhuber, J, Borsch, T, Müller, KF, Worberg, A, Porembski, S, and Barthlott, W. 2006. “Smallest angiosperm genomes found in Lentibulariaceae, with chromosomes of bacterial size.” Plant Biology, № 8: 770–777. doi: 10.1055/s-2006-924101.
• Müller, KF, Borsch, T, and Hilu, KW. 2006. “Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F and rbcL in basal angiosperms.” Molecular Phylogenetics and Evolution, № 41 (1): 99–117. doi: 10.1016/j.ympev.2006.06.017.
• KF, Müller. 2006. “Incorporating information from length-mutational events into phylogenetic analysis.” Molecular Phylogenetics and Evolution, № 38 (3): 667–76. doi: 10.1016/j.ympev.2005.07.011.
• Müller, KF, and Borsch, T. 2005. “Multiple origins of a unique pollen feature: stellate pore ornamentation in Amaranthaceae.” Grana, № 44: 266–281. doi: 10.1080/00173130500477787.
• KF, Müller. 2005. “The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support.” BMC Evolutionary Biology, № 5: 58. doi: 10.1186/1471-2148-5-58.
• T, Cieslack, Polepalli, A, White, KF, Müller, T, Borsch, W, Barthlott, J, Steiger, A, Marchand, and L, Legendre. 2005. “Phylogenetic Analysis of Pinguicula (Lentibulariaceae): Chloroplast DNA Sequences and Morphology Support Several Geographically Distinct Radiations.” American Journal of Botany, № 92: 1723–1736. doi: 10.3732/ajb.92.10.1723.
• Bartelheimer, M, Steinlein, T, and Beyschlag, W. 2006. “Aggregative root placement: a feature during interspecific competition in inland sand-dune habitats.” Plant and Soil, № 280: 101–114. doi: 10.1007/s11104-005-2612-x.
• Borsch, T, Löhne, C, Müller, KF, Hilu, KW, Wanke, S, Worberg, A, Barthlott, W, Neinhuis, C, and Quandt, D. 2005. “Towards Understanding Basal Angiosperm Diversification: Recent Insights Using Rapidly Evolving Genomic Regions.” Nova Acta Leopoldina 92, № 342: 85–110.
• Müller, KF, and Borsch, T. 2005. “Phylogenetics of Amaranthaceae based on matK/trnK sequence data - evidence from parsimony, likelihood, and Bayesian analyses.” Annals of the Missouri Botanical Garden, № 92 (1): 66–102.
• KF, Müller. 2005. “SeqState - primer design and sequence statistics for phylogenetic DNA data sets.” Applied Bioinformatics, № 4: 66–69.
• Rahmanzadeh, R, Müller, KF, Fischer, E, Bartels, D, and Borsch, T. 2005. “The Linderniaceae and Gratiolaceae (Lamiales) are further lineages distinct from Scrophulariaceae.” Plant Biology, № 7 (1): 67–78. doi: 10.1055/s-2004-830444.
• Müller, KF, and Borsch, T. 2005. “Phylogenetics of Utricularia (Lentibulariaceae) and molecular evolution of the trnK intron in a lineage with high substitutional rates.” Plant Systematics and Evolution, № 250: 39–67. doi: 10.1007/s00606-004-0224-1.
• Neinhuis, C, Wanke, S, Hilu, KW, Müller, KF, and Borsch, T. 2004. “Phylogeny of Aristolochiaceae based on parsimony, likelihood, and Bayesian analyses of trnL-trnF sequences.” Plant Systematics and Evolution, № 250: 7–26. doi: 10.1007/s00606-004-0217-0.
• Müller, J, and Müller, KF. 2004. “TreeGraph: automated drawing of complex tree figures using an extensible tree description format.” Molecular Ecology Notes, № 4: 186–788. doi: 10.1111/j.1471-8286.2004.00813.x.
• Müller, KF, Borsch, T, Legendre, L, Porembski, S, Theisen, I, and Barthlott, W. 2004. “Evolution of carnivory in Lentibulariaceae and the Lamiales.” Plant Biology, № 6: 477–490. doi: 10.1055/s-2004-817909.
• KF, Müller. 2004. “PRAP - computation of Bremer support for large data sets.” Molecular Phylogenetics and Evolution, № 31 (2): 780–782. doi: 10.1016/j.ympev.2003.12.006.
• Hilu KW, Borsch T, Müller KF, Soltis DE, Soltis PS, Savolainen V, Chase M, Powell M, Alice, Evans R, Sauquet H, Neinhuis C, Slotta, Rohwer, and Campbell, Chatrou L. 2003. “Angiosperm phylogeny based on matK sequence information.” American Journal of Botany, № 90: 1758–1776. doi: 10.3732/ajb.90.12.1758.
• Quandt, D, Müller, KF, and Huttunen, S. 2003. “Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions.” Plant Biology, № 5: 400–410. doi: 10.1055/s-2003-42715.
• Müller, J, and Müller, KF. 2003. “QuickAlign: A New Alignment Editor.” Plant Molecular Biology Reporter, № 21: 1–5. doi: 10.1007/BF02773390.
• Müller, KF, Borsch, T, Legendre, L, Theisen, I, and Barthlott, W. 2002. “Evolution of carnivory in the Lentibulariaceae: considerations based on molecular, morphological, and physiological evidence.” Proceedings of the 4th International Carnivorous Plant Conference, Tokyo, Japan 2002: 63–73.
• Frahm, KF, Müller, and M, Stech. 2000. “The taxonomic status of Eurhynchium crassinervium from river banks based on ITS sequence data.” Journal of Bryology, № 22: 291–306.

Research Article (Book Contributions)

• KF, Müller. 2022. “Magnoliopsida (Angiosperms) p.p. Subclass Rosidae p.p. (Trochodendranae to Saxifraganae).” in Syllabus of Plant Families - Part 5/1, edited by W Frey. Stuttgart: Borntraeger.
• Müller, KF, Fischer, and E. 2022. “Magnoliopsida (Angiosperms) p.p. Subclass Rosidae p.p. (Rosanae to Berberidopsidanae).” in Syllabus of Plant Families - Part 5/1, edited by W Frey. Stuttgart: Borntraeger.
• Grimm, J, Hoffmann, M, Stöver, BC, Müller, KF, and Steinhage, V. 2016. “Image-Based Identification of Plant Species Using a Model-Free Approach and Active Learning.” in KI 2016: Advances in Artificial Intelligence, Lecture Notes in Computer Science, edited by G Friedrich, M Helmert and F Wotawa. Basel: Springer International Publishing. doi: 10.1007/978-3-319-46073-4_16.
• Wicke, S, and Schneeweiss, GM. 2015. “Next generation organellar genomics: Potentials and pitfalls of high-throughput technologies for molecular evolutionary studies and plant systematics.” in Next generation sequencing in plant systematics, Regnum Vegetabile, edited by E Hörandl and M Appelhans. Oberreifenberg / Koenigstein: Koeltz. doi: 10.14630/000002.
• Wicke, S. 2013. “Genomic evolution in Orobanchaceae.” in Parasitic Orobanchaceae - Parasitic Mechanisms and Control Strategies , edited by DM Joel, J Gressel and LJ Musselman. Düsseldorf: Springer VDI Verlag. doi: 10.1007/978-3-642-38146-1_15.
• Poschlod, P, Abedi, M, Bartelheimer, M, Drobnik, J, Rosbakh, S, and Saatkamp, A. 2013. “Seed Ecology and Assembly Rules in Plant Communities.” in Vegetation Ecology, edited by E Van der Maarel and J Franklin. New York City: John Wiley & Sons. doi: 10.1002/9781118452592.ch6.
• KF, Müller. 2011. “Biodiversität und Evolution.” in Perspektiven - Forschungsfragen der Zukunft, edited by J Behler, S Fischer, A Funke, B Hartmann, U Heimhofer, W Martens, KF Müller, K Schmidt, C Schuchart, M Spehr, O Trapp, M Wagner and C Zwierlein. Paderborn: Ferdinand Schöningh.
• Quandt, D, Müller, KF, Stech, M, Hilu, KW, Frey, W, Frahm, J-P, and Borsch, T. 2004. “Molecular evolution of the chloroplast trnL-F region in land plants.” in Molecular Systematics of Bryophytes, Monographs in Systematic Botany from the Missouri Botanical Garden, edited by B Goffinet, V Hollowell and R Magill. St. Louis: Missouri Botanical Garden Press.
• Huttunen, S, Ignatov, MS, Müller, KF, and Quandt, D. 2004. “The phylogeny and evolution of epiphytism in three moss families Meteoriaceae, Brachytheciaceae, and Lembophyllaceae.” in Molecular Systematics of Bryophytes, Monographs in Systematic Botany from the Missouri Botanical Garden, edited by B Goffinet, V Hollowell and R Magill. St. Louis: Missouri Botanical Garden Press.

Non-Scientific Contributions (Journals)

• Asshoff, Roman, Dankbar, Julia, and Bartelheimer, Maik. 2024. “Pflanzliche Gipfelstürmer - Bedroht der Klimawandel die alpine Flora?” Unterricht Biologie, № 495: 32–38.
• Asshoff, R., Dankbar, J., and Bartelheimer, M. 2019. “Licht und Schatten. Mathematisieren im Biologieunterricht im Kontext einer ökologischen Freilandübung.” Der mathematisch-naturwissenschaftliche Unterricht, № 72 (03): 222–228.

Books (Monographs)

• Knoop, V, and Müller, KF. 2008. Gene und Stammbäume: Ein Handbuch zur molekularen Phylogenetik, 2. edt. Heidelberg: Spektrum Akademischer Verlag.
• Knoop, V, and Müller, KF. 2006. Gene und Stammbäume. Ein Handbuch zur molekularen Phylogenetik. Heidelberg: Spektrum Akademischer Verlag.

Theses (Doctoral or Postdoctoral)

• Stöver, and BC. 2018. “Software components for increased data reuse and reproducibility in phylogenetics and phylogenomics.” Dissertation thesis, WWU Münster.
• Bartelheimer, M. 2013. “Ecophysiology of root interactions and plant niche differentiation.” Habilitation thesis, University of Regensburg.
• Müller, Kai. 2005. “Evolution of Amaranthaceae - A case study integrating molecular phylogenetics and pollen data.” Dissertation thesis, Rheinische Friedrich-Wilhems-Universität Bonn.
• Bartelheimer, M. 2005. “Pflanzliche Interaktionen in ressourcenarmen Sandökosystemen: Die Bedeutung funktioneller und morphologischer Wurzelparameter für die unterirdische Konkurrenzfähigkeit.” Dissertation thesis, University of Bielefeld.