• Artikel
• Fachbücher (Monografien)
• Qualifikationsschriften (Dissertationen, Habilitationsschriften)

Artikel

Forschungsartikel (Zeitschriften)

• Fischer, Eberhard, Killmann, Dorothee, Gerlach, Johanna, Schütte, Claudia, Leh, Burkhard, Müller, Kai, und Quandt, Dietmar. 2024. „Hoefkenia hunsrueckensis, a New Genus and Species from Europe, and the Identity of Virescentia vogesiaca (F.W.Schultz ex Skuja) Necchi, D.C.Agostinho & M.L.Vis (Batrachospermales, Rhodophyta).“ Diversity, Nr. 16 (8) 473. doi: 10.3390/d16080473.
• Wiechers, S, Kösters, LM, Quandt, D, Borsch, T, Wicke, S, und Müller, KF. 2023. „BarKeeper – A versatile web framework to assemble, analyze, and manage DNA barcoding data and metadata.“ Methods in Ecology and Evolution, Nr. Early View doi: 10.1111/2041-210X.14047.
• Wolf, M, Zapf, K, Gupta, DK, Hiller, M, Árnason, Ú, und Janke, A. 2023. „The genome of the pygmy right whale illuminates the evolution of rorquals.“ BMC Biology, Nr. 21 (79) doi: 10.1186/s12915-023-01579-1.
• Wolf, Magnus, Greve, Carola, Schell, Tilman, Janke, Axel, Schmitt, Thomas, Pauls, Steffen U, Aspöck, Horst, und Aspöck, Ulrike. 2023. „The de novo genome of the Black-necked Snakefly (Venustoraphidia nigricollis Albarda, 1891): A resource to study the evolution of living fossils.“ The Journal of heredity, Nr. 115 (1): 112–119. doi: 10.1093/jhered/esad074.
• Wolf, M, de Jong, M, Halldórsson, SD, Árnason, Ú, und Janke, A. 2022. „Genomic Impact of Whaling in North Atlantic Fin Whales.“ Molecular Biology and Evolution, Nr. 39 (5) doi: 10.1093/molbev/msac094.
• Mašková, T, Phartyal, SS, Abedi, M, Bartelheimer, M, und Poschlod, P. 2022. „Soil moisture level and substrate type determine long-term seed lifespan in a soil seed bank.“ Plant and Soil, Nr. 477: 475–485. doi: 10.1007/s11104-022-05449-7.
• Bathe, M, Bartelheimer, M, und Asshoff, R. 2021. „Alltagsvorstellungen zum Platzen von Kirschen im Kontext der Modellkompetenz.“ MNU Journal, Nr. 74: 50–53.
• Ordon, K, Bartelheimer, M, und Asshoff, R. 2021. „Biology student teachers’ interest and self-efficacy in planning and conducting field trips after participation in a university course.“ Environmental Education Research, Nr. 27: 88–109. doi: 10.1080/13504622.2020.1849565.
• Kösters, LM, Wiechers, S, Lyko, P, Müller, KF, und Wicke, S. 2021. „WARPP - web application for the research of parasitic plants.“ Plant Physiology, Nr. 185: 1374–1380. doi: 10.1093/plphys/kiaa105.
• Asshoff, R, Bartelheimer, M, Kullmann, H, Kurtz, J, Meyer, EI, Müller, K, Scharsack, J, und Schütz, H-U. 2020. „Studierende in der Rolle von Exkursionsleiterinnen und Exkursionsleitern – Auswirkungen auf Interesse, Einstellungen und Selbstwirksamkeit.“ Natur und Landschaft, Nr. 6-2020: 269–275.
• Reisch, C, Meier, S, Schmid, C, und Bartelheimer, M. 2020. „Clonal diversity and genetic variation of the sedge Carex nigra in an alpine fen depend on soil nutrients.“ PeerJ — the Journal of Life and Environmental Sciences, Nr. 8 (e8887) doi: 10.7717/peerj.8887.
• Schlesak, S, Hedenäs, L, Nebel, M, und Quandt, D. 2019. „Addendum to Hypnum subcomplanatum Hedenäs, Schlesak, D. Quandt.“ Bryophyte Diversity and Evolution, Nr. 41 (1): 1–1.
• Stöver, BC, Wiechers, S, und Müller, KF. 2019. „JPhyloIO: A Java library for event-based reading and writing of different phylogenetic file formats through a common interface.“ BMC Bioinformatics, Nr. 20 (1): 402. doi: 10.1186/s12859-019-2982-3.
• Aly, R, Lati, R, Abu-Nassar, J, Ziadna, H, Achdari, G, von Muenchow, CS, Wicke, S, Bari, VK, und Eizenberg, H. 2019. „The weedy parasite Phelipanche aegyptiaca attacks Brassica rapa var. rapa L. for the first time in Israel.“ Plant Disease, Nr. 2019: 1. doi: 10.1094/PDIS-02-19-0285-PDN.
• Schlesak, S, Hedenäs, L, Nebel, M, und Quandt, D. 2018. „Cleaning a taxonomic dustbin: placing the European Hypnum species in a phylogenetic context!“ Bryophyte Diversity and Evolution, Nr. 40 (2): 37–54. doi: 10.11646/bde.40.2.3.
• Maul, K, Krug, M, Nickrent, DL, Müller, KF, Quandt, D, und Wicke, S. 2018. „Morphology, geographic distribution, and host preferences are poor predictors of phylogenetic relatedness in the mistletoe genus Viscum L.“ Molecular Phylogenetics and Evolution, Nr. 131: 106–115. doi: 10.1016/j.ympev.2018.10.041.
• Borsch, T, Flores-Olvera, H, Zumaya, S, und Müller, KF. 2018. „Pollen characters and DNA sequence data converge on a monophyletic genus Iresine (Amaranthaceae, Caryophyllales) and help to elucidate its species diversity.“ Taxon, Nr. 67: 944–976. doi: 10.12705/675.7.
• Poppinga, S, Westermeier, AS, Fleischmann, A, Müller, KF, und Speck, T. 2018. „Evolution of a sucker: Functional principles of traps in carnivorous bladderworts (Utricularia, Lentibulariaceae).“ Atlas of Science, Nr. 1
• Barrett, CF, Wicke, S, und Sass, C. 2018. „Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex.“ New Phytologist, Nr. 218 (3): 1192–1204. doi: 10.1111/nph.15072.
• Sattler, J, und Bartelheimer, M. 2018. „Root responses to legume plants integrate information on nitrogen availability and neighbour identity.“ Basic and Applied Ecology, Nr. 27: 51–60. doi: 10.1016/j.baae.2018.01.001.
• Wang, Y-H, Wicke, S, Wang, H, Jin, J-J, Chen, S-Y, Zhang, S-D, Li, D-Z, und Yi, T-S. 2018. „Plastid genome evolution in the early-diverging legume subfamily Cercidoideae (Fabaceae).“ Frontiers in Plant Science, Nr. 8: 138. doi: 10.3389/fpls.2018.00138.
• Westermeier, AS, Fleischmann, A, Müller, K, Schäferhoff, B, Rubach, C, Speck, T, und Poppinga, S. 2017. „Trap diversity and character evolution in carnivorous bladderworts (Utricularia, Lentibulariaceae).“ Scientific Reports, Nr. 7: 12052. doi: 10.1038/s41598-017-12324-4.
• Araya, Y, Bartelheimer, M, Valle, C, Crujeiras, R, und García-Baquero, G. 2017. „Does functional soil microbial diversity contribute to explain within-site plant beta-diversity in an alpine grassland and a dehesa meadow in Spain?“ Journal of Vegetation Science, Nr. 28: 1018–1027. doi: 10.1111/jvs.12557.
• Noben, S, Kessler, M, Quandt, D, Weigand, A, Wicke, S, Krug, M, und Lehnert, M. 2017. „Biogeography of the Gondwanan tree fern family Dicksoniaceae—A tale of vicariance, dispersal and extinction.“ Journal of Biogeography, Nr. 44 (11): 2648–2659. doi: 10.1111/jbi.13056.
• Barré, P, Stöver, BC, Müller, KF, und Steinhage, V. 2017. „LeafNet: A computer vision system for automatic plant species identification.“ Ecological Informatics, Nr. 40: 50–56. doi: 10.1016/j.ecoinf.2017.05.005.
• Levy, Karin E, Ashkenazy, H, Wicke, S, Pupko, T, und Mayrose, I. 2017. „TraitRateProp: A web server for the detection of trait-dependent evolutionary rate shifts in sequence sites.“ Nucleic Acids Research, Nr. 45 (1): W260–W264. doi: 10.1093/nar/gkx288.
• Levy, Karin E, Wicke, S, Pupko, T, und Mayrose, I. 2017. „An integrated model of phenotypic trait changes and site-specific sequence evolution.“ Systematic Biology, Nr. 66 (6): 917–933. doi: 10.1093/sysbio/syx032.
• Röschenbleck, J, Wicke, S, Weinl, S, Kudla, J, und Müller, KF. 2017. „Genus-wide screening reveals four distinct types of structural plastid genome organization in Pelargonium (Geraniaceae).“ Genome Biology and Evolution, Nr. 9 (1): 64–76. doi: 10.1093/gbe/evw271.
• Geiger, M.F., Astrin, J.J., Borsch, T., Burkhardt, U., Grobe, P., Hand, R., Hausmann, A., Hohberg, K., Krogmann, L., Lutz, M., Monje, C., Misof, B., Morinière, J., Müller, Kai F., Pietsch, S., Quandt, Dietmar, Rulik, B., Scholler, M., Traunspurger, W., Haszprunar, G., und Wägele, W. 2016. „How to tackle the molecular species inventory for an industrialized nation-lessons from the first phase of the German Barcode of Life initiative GBOL (2012-2015).“ Genome, Nr. 59: 661–670.
• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Bellot, S, und Schneeweiss, GM. 2016. „Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants.“ Proceedings of the National Academy of Sciences of the United States of America, Nr. 113 (32): 9045–9050. doi: 10.1073/pnas.1607576113.
• Feng, YL, Wicke, S, Li, JW, Han, Y, Lin, CS, Li, DZ, Zhou, TT, Huang, WC, Huang, LQ, und Jin, XH. 2016. „Lineage-specific reductions of plastid genomes in an orchid tribe with partially and fully mycoheterotrophic species.“ Genome Biology and Evolution, Nr. 8 (7): 2164–2175. doi: 10.1093/gbe/evw144.
• Bartelheimer, M, und Poschlod, P. 2016. „Ellenberg's water table experiment put to the test: species optima along a hydrological gradient.“ Oecologia, Nr. 181: 1163–1172. doi: 10.1007/s00442-016-3624-3.
• Bartelheimer, M, und Poschlod, P. 2016. „Functional characterizations of Ellenberg Indicator Values - a review on ecophysiological determinants.“ Functional Ecology, Nr. 30: 506–516. doi: 10.1111/1365-2435.12531.
• Cusimano, N, und Wicke, S. 2016. „Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae.“ New Phytologist, Nr. 210 (2): 680–693. doi: 10.1111/nph.13784.
• Bitard-Feildel, Tristan, Heberlein, Magdalena, Bornberg-Bauer, Erich, und Callebaut, Isabelle. 2015. „Detection of orphan domains in <i>Drosophila</i> using "hydrophobic cluster analysis".“ Biochimie, Nr. 119 doi: 10.1016/j.biochi.2015.02.019.
• Kilian, N, Henning, T, Plitzner, P, Müller, A, Güntsch, A, Stöver, BC, Müller, KF, Berendsohn, WG, und Borsch, T. 2015. „Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens.“ Database, Nr. 2015: bav094. doi: 10.1093/database/bav094.
• Höpfner, I, Beyschlag, W, Bartelheimer, M, Werner, C, und Unger, S. 2015. „Role of mycorrhization and nutrient availability in competitive interactions between the grassland species Plantago lanceolata and Hieracium pilosella.“ Plant Ecology, Nr. 216: 887–899. doi: 10.1007/s11258-015-0476-6.
• Szövényi, P, Frangedakis, E, Ricca, M, Quandt, D, Wicke, S, und Langdale, JA. 2015. „Establishment of Anthoceros agrestis as a model species for studying the biology of hornworts.“ BMC Plant Biology, Nr. 15: 98. doi: 10.1186/s12870-015-0481-x.
• Schmid, C, Bauer, S, und Bartelheimer, M. 2015. „Should I stay or should I go? Roots segregate in response to competition intensity.“ Plant and Soil, Nr. 391: 283–291. doi: 10.1007/s11104-015-2419-3.
• Milutinović, B, Fritzlar, S, und Kurtz, J. 2014. „Increased Survival in the Red Flour Beetle after Oral Priming with Bacteria-Conditioned Media.“ Journal of Innate Immunity, Nr. 6 (3): 306–314. doi: 10.1159/000355211.
• Bartelheimer, M, Schmid, C, Storf, J, Hell, K, und Bauer, S. 2015. „Interspecific competition in Arabidopsis thaliana – a knowledge gap is starting to close.“ Progress in Botany, Nr. 76: 303–319. doi: 10.1007/978-3-319-08807-5_12.
• Fleischmann, A, Michael, T, Rivadavia, F, Wang, W, Temsch, E, Greilhuber, J, Müller, KF, und Heubl, G. 2014. „Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms.“ Annals of Botany, Nr. 114 (8): 1651–1663. doi: 10.1093/aob/mcu189.
• Wicke, S, Schäferhoff, B, dePamphilis, CW, und Müller, KF. 2014. „Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae.“ Molecular Biology and Evolution, Nr. 31 (3): 529–545. doi: 10.1093/molbev/mst261.
• Röschenbleck, J, Albers, F, Müller, KF, Weinl, S, und Kudla, J. 2014. „Phylogenetics, character evolution and a subgeneric revision of the genus Pelargonium (Geraniaceae).“ Phytotaxa, Nr. 159 (2): 31–76.
• Wicke, S, Müller, KF, dePamphilis, CW, Quandt, D, Wickett, NJ, Zhang, Y, Renner, SS, und Schneeweiss, GM. 2013. „Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family.“ The Plant Cell, Nr. 25: 3711–3725. doi: 10.1105/tpc.113.113373.
• Fischer, E, Schäferhoff, B, und Müller, KF. 2013. „The phylogeny of Linderniaceae - The new genus Linderniella, and new combinations within Bonnaya, Craterostigma, Lindernia, Torenia and Vandellia.“ Willdenowia, Nr. 43: 209–238. doi: 10.3372/wi.43.43201.
• Testroet, P, Quandt, D, Santos-Guerra, A, Müller, KF, und Lobin, W. 2013. „Population genetics and conservation of Sideroxylon canariense (Sapotaceae) on the Canary Islands.“ Vieraea, Nr. 41: 295–308.
• Abedi, M, Bartelheimer, M, und Poschlod, P. 2014. „Effects of substrate type, moisture and its interaction on soil seed survival of three Rumex species.“ Plant and Soil, Nr. 374: 485–495. doi: 10.1007/s11104-013-1903-x.
• Bartelheimer, M, und Poschlod, P. 2014. „The response of grassland species to nitrate versus ammonium coincides with their pH optima.“ Journal of Vegetation Science, Nr. 25: 760–770. doi: 10.1111/jvs.12124.
• Schmid, C, Bauer, S, Müller, B, und Bartelheimer, M. 2013. „Belowground neighbor perception in Arabidopsis thaliana studied by transcriptome analysis: roots of Hieracium pilosella cause biotic stress.“ Frontiers in Plant Science, Nr. 4: 296. doi: 10.3389/fpls.2013.00296.
• Müller, B, und Bartelheimer, M. 2013. „Interspecific competition in Arabidopsis thaliana: root hairs are important for competitive effect, but not for competitive response.“ Plant and Soil, Nr. 371: 167–177. doi: 10.1007/s11104-013-1675-3.
• Damayanti, L, Muñoz, J, Wicke, S, Symmank, L, Shaw, B, Frahm, J-P, und Quandt, D. 2012. „Common but new: Bartramia rosamrosiae, a 'new' widespread species of apple mosses (Bartramiales, Bryophytina) from the Mediterranean and western North America.“ Phytotaxa, Nr. 73: 37–59.
• M*, Abedi, contributing), Bartelheimer M* (*equally, und P, Poschlod. 2013. „Aluminium toxic effects on seedling root survival affect plant composition along soil reaction gradients – a case study in dry sandy grasslands.“ Journal of Vegetation Science, Nr. 24: 1074–1085. doi: 10.1111/jvs.12016.
• Fischer, E, Schäferhoff, B, und Müller, KF. 2012. „The new monotypic genus Bardotia (Orobanchaceae) from Madagascar and remarks on the phylogenetic relationships of the African and Madagascan genera Micrargeria, Parastriga, Radamaea, Rhamphicarpa and Sieversandreas.“ Phytotaxa, Nr. 46: 19–33.
• Barniske, A, Borsch, T, Müller, KF, Krug, M, Worberg, A, Neinhuis, C, und Quandt, D. 2012. „Phylogenetics of early branching eudicots: comparing phylogenetic signal accross chloroplast introns, spacers, and genes.“ Journal of Systematics and Evolution, Nr. 50: 85–108. doi: 10.1111/j.1759-6831.2012.00181.x.
• Naumann, J, Symmank, L, Samain, M, Müller, KF, Neinhuis, C, dePamphilis, CW, und Wanke, S. 2011. „Chasing the hare - Evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level.“ BMC Evolutionary Biology, Nr. 11: 357. doi: 10.1186/1471-2148-11-357.
• KF, Müller. 2011. „McPherson S. (ed. by Fleischmann A. and Robinson A.): Carnivorous plants and their habitats. (Book review).“ Willdenowia, Nr. 42: 387–388.
• Wicke, S, Costa, A, Muñoz, J, und Quandt, D. 2011. „Restless 5S: The re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants.“ Molecular Phylogenetics and Evolution, Nr. 61 (2): 321–332. doi: 10.1016/j.ympev.2011.06.023.
• Korotkova, N, Borsch, T, Quandt, D, Taylor, NP, Müller, KF, und Barthlott, W. 2011. „What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae).“ American Journal of Botany, Nr. 98 (9): 1549–1572. doi: 10.3732/ajb.1000502.
• Wicke, S, Schneeweiss, GM, dePamphilis, CW, Müller, KF, und Quandt, D. 2011. „The evolution of the plastid chromosome in land plants: gene content, gene order, gene function.“ Plant Molecular Biology, Nr. 76 (3-5): 273–297. doi: 10.1007/s11103-011-9762-4.
• Schäferhoff, B, Fleischmann, A, Fischer, E, Albach, DC, Borsch, T, Heubl, G, und Müller, KF. 2010. „Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences.“ BMC Evolutionary Biology, Nr. 10 doi: 10.1186/1471-2148-10-352.
• Simmons, MP, Müller, KF, und Norton. 2010. „Alignment of, and phylogenetic inference from, random sequences: the susceptibility of alternative methods to artifactual resolution and support.“ Molecular Phylogenetics and Evolution, Nr. 57 (3): 1004–1016. doi: 10.1016/j.ympev.2010.09.004.
• Preußing, M, Olsson, S, Schäfer-Verwimp, A, Wickett, NJ, Wicke, S, Quandt, D, und Nebel, M. 2010. „New insights in the evolution of the liverwort family Aneuraceae (Metzgeriales, Marchantiophyta), with emphasis on the genus Lobatiriccardia.“ Taxon, Nr. 59 (5): 1424–1440.
• Fleischmann, A, Schäferhoff, B, Heubl, G, Rivadavia, F, Barthlott, W, und Müller, KF. 2010. „Phylogenetics and character evolution in the carnivorous plant genus Genlisea A. St.-Hil. (Lentibulariaceae).“ Molecular Phylogenetics and Evolution, Nr. 56 (2): 768–783. doi: 10.1016/j.ympev.2010.03.009.
• Simmons, MP, Webb, CT, und Müller, KF. 2010. „The deterministic effects of alignment bias in phylogenetic inference.“ Cladistics, Nr. 27 (4): 402–416. doi: 10.1111/j.1096-0031.2010.00333.x.
• Simmons, MP, Zhang, LB, und Müller, KF. 2010. „Phylogenetic inference using non-redundant coding of dependent characters vs. alternative approaches when applied to protein-coding genes.“ Cladistics, Nr. 27 (2): 186–196. doi: 10.1111/j.1096-0031.2010.00327.x.
• Stöver, BC, und Müller, KF. 2010. „TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.“ BMC Bioinformatics, Nr. 11: 7. doi: 10.1186/1471-2105-11-7.
• Müller, KF, und Albach, DC. 2010. „Evolutionary rates in Veronica L. (Plantaginaceae): Disentangling the influence of life history and breeding system.“ Journal of Molecular Evolution, Nr. 70 (1): 44–56. doi: 10.1007/s00239-009-9307-5.
• Bartelheimer, M, Gowing, D, und Silvertown, J. 2010. „Explaining hydrological niches: the decisive role of below-ground competition in two closely related Senecio species.“ Journal of Ecology, Nr. 98: 126–136. doi: 10.1111/j.1365-2745.2009.01598.x.
• Schäferhoff, B, Müller, KF, und Borsch, T. 2009. „Caryophyllales phylogenetics: disentangling Phytolaccaceae and Molluginaceae and description of Microteaceae as a new isolated family.“ Willdenowia, Nr. 39: 209–228.
• Wicke, S, und Quandt, D. 2009. „Universal primers for the amplification of the plastid trnK/matK region in land plants.“ Anales del Jardín Botánico de Madrid, Nr. 66 (2): 285–288. doi: 10.3989/ajbm.2231.
• Simmons, MP, Müller, KF, und Webb, CT. 2008. „The relative sensitivity of different alignment methods and character codings in sensitivity analysis.“ Cladistics, Nr. 24 (6): 1039–1050. doi: 10.1111/j.1096-0031.2008.00230.x.
• Beck, SG, Fleischmann, A, Huaylla, H, Müller, KF, und Borsch, T. 2008. „Pinguicula chuquisacensis (Lentibulariaceae), a new species from the Bolivian Andes, and first insights on phylogenetic relationships among South American Pinguicula.“ Willdenowia, Nr. 38: 201–212.
• Wahrmund U, Rein T, Frahm, Müller KF, und Groth-Malonek M, Knoop V. 2008. „Fifty mosses on five trees: Comparing phylogenetic information in three types of non-coding mitochondrial DNA and two chloroplast loci.“ Plant Systematics and Evolution, Nr. 282: 241–255. doi: 10.1007/s00606-008-0043-x.
• Bartelheimer, M, Steinlein, T, und Beyschlag, W. 2008. „15N-nitrate-labelling demonstrates a size symmetric competitive effect on belowground resource uptake.“ Plant Ecology, Nr. 199: 243–253. doi: 10.1007/s11258-008-9429-7.
• Wall, PK, Leebens-Mack, J, Müller, KF, Field, D, Altman, NS, und dePamphilis, CW. 2007. „PlantTribes: A gene and gene family resource for comparative genomics in plants.“ Nucleic Acids Research, Nr. 36 (IS 1): D970–D976. doi: 10.1093/nar/gkm972.
• Jansen RK, Cai Z, Daniell H, Raubeson L, DePamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee, Peery R, McNeal JR, und Kuehl JV, Boore JL. 2007. „Analysis of 81 Genes from 64 Chloroplast Genomes Resolves Relationships in Angiosperms and Identifies Genome-Scale Evolutionary Patterns.“ Proceedings of the National Academy of Sciences of the United States of America, Nr. 104 (49): 19369–19374. doi: 10.1073/pnas.0709121104.
• Barakat, A, Müller, KF, und Sáenz, de Miera. 2007. „Molecular evolutionary analysis of the Arabidopsis L7 ribosomal protein gene family.“ Gene, Nr. 403: 143–150. doi: 10.1016/j.gene.2007.08.002.
• Simmons, MP, Müller, KF, und Norton, AP. 2007. „The relative performance of indel-coding methods in simulations.“ Molecular Phylogenetics and Evolution, Nr. 44: 724–740. doi: 10.1016/j.ympev.2007.04.001.
• Weigelt, A, Schumacher, J, Walther, T, Bartelheimer, M, Steinlein, T, und Beyschlag, W. 2007. „On the hyperbolic competition model – Reply.“ Journal of Ecology, Nr. 95: 601–602. doi: 10.1111/j.1365-2745.2007.01260.x.
• Simmons MP, Zhang, und Webb CT, Müller KF. 2007. „A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference.“ Molecular Phylogenetics and Evolution, Nr. 42: 528–542. doi: 10.1016/j.ympev.2006.08.008.
• Weigelt, A, Schumacher, J, Walther, T, Bartelheimer, M, Steinlein, T, und Beyschlag, W. 2007. „Identifying mechanisms of competition in multi-species communities.“ Journal of Ecology, Nr. 95: 53–64. doi: 10.1111/j.1365-2745.2006.01198.x.
• Müller, K, Borsch, T, Legendre, L, Porembski, S, und Barthlott, W. 2006. „Recent progress in understanding the evolution of Lentibulariaceae.“ Plant Biology, Nr. 8: 748–757. doi: 10.1055/s-2006-924706.
• Greilhuber, J, Borsch, T, Müller, KF, Worberg, A, Porembski, S, und Barthlott, W. 2006. „Smallest angiosperm genomes found in Lentibulariaceae, with chromosomes of bacterial size.“ Plant Biology, Nr. 8: 770–777. doi: 10.1055/s-2006-924101.
• Müller, KF, Borsch, T, und Hilu, KW. 2006. „Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F and rbcL in basal angiosperms.“ Molecular Phylogenetics and Evolution, Nr. 41 (1): 99–117. doi: 10.1016/j.ympev.2006.06.017.
• KF, Müller. 2006. „Incorporating information from length-mutational events into phylogenetic analysis.“ Molecular Phylogenetics and Evolution, Nr. 38 (3): 667–76. doi: 10.1016/j.ympev.2005.07.011.
• Müller, KF, und Borsch, T. 2005. „Multiple origins of a unique pollen feature: stellate pore ornamentation in Amaranthaceae.“ Grana, Nr. 44: 266–281. doi: 10.1080/00173130500477787.
• KF, Müller. 2005. „The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support.“ BMC Evolutionary Biology, Nr. 5: 58. doi: 10.1186/1471-2148-5-58.
• T, Cieslack, Polepalli, A, White, KF, Müller, T, Borsch, W, Barthlott, J, Steiger, A, Marchand, und L, Legendre. 2005. „Phylogenetic Analysis of Pinguicula (Lentibulariaceae): Chloroplast DNA Sequences and Morphology Support Several Geographically Distinct Radiations.“ American Journal of Botany, Nr. 92: 1723–1736. doi: 10.3732/ajb.92.10.1723.
• Bartelheimer, M, Steinlein, T, und Beyschlag, W. 2006. „Aggregative root placement: a feature during interspecific competition in inland sand-dune habitats.“ Plant and Soil, Nr. 280: 101–114. doi: 10.1007/s11104-005-2612-x.
• Borsch, T, Löhne, C, Müller, KF, Hilu, KW, Wanke, S, Worberg, A, Barthlott, W, Neinhuis, C, und Quandt, D. 2005. „Towards Understanding Basal Angiosperm Diversification: Recent Insights Using Rapidly Evolving Genomic Regions.“ Nova Acta Leopoldina 92, Nr. 342: 85–110.
• Müller, KF, und Borsch, T. 2005. „Phylogenetics of Amaranthaceae based on matK/trnK sequence data - evidence from parsimony, likelihood, and Bayesian analyses.“ Annals of the Missouri Botanical Garden, Nr. 92 (1): 66–102.
• KF, Müller. 2005. „SeqState - primer design and sequence statistics for phylogenetic DNA data sets.“ Applied Bioinformatics, Nr. 4: 66–69.
• Rahmanzadeh, R, Müller, KF, Fischer, E, Bartels, D, und Borsch, T. 2005. „The Linderniaceae and Gratiolaceae (Lamiales) are further lineages distinct from Scrophulariaceae.“ Plant Biology, Nr. 7 (1): 67–78. doi: 10.1055/s-2004-830444.
• Müller, KF, und Borsch, T. 2005. „Phylogenetics of Utricularia (Lentibulariaceae) and molecular evolution of the trnK intron in a lineage with high substitutional rates.“ Plant Systematics and Evolution, Nr. 250: 39–67. doi: 10.1007/s00606-004-0224-1.
• Neinhuis, C, Wanke, S, Hilu, KW, Müller, KF, und Borsch, T. 2004. „Phylogeny of Aristolochiaceae based on parsimony, likelihood, and Bayesian analyses of trnL-trnF sequences.“ Plant Systematics and Evolution, Nr. 250: 7–26. doi: 10.1007/s00606-004-0217-0.
• Müller, J, und Müller, KF. 2004. „TreeGraph: automated drawing of complex tree figures using an extensible tree description format.“ Molecular Ecology Notes, Nr. 4: 186–788. doi: 10.1111/j.1471-8286.2004.00813.x.
• Müller, KF, Borsch, T, Legendre, L, Porembski, S, Theisen, I, und Barthlott, W. 2004. „Evolution of carnivory in Lentibulariaceae and the Lamiales.“ Plant Biology, Nr. 6: 477–490. doi: 10.1055/s-2004-817909.
• KF, Müller. 2004. „PRAP - computation of Bremer support for large data sets.“ Molecular Phylogenetics and Evolution, Nr. 31 (2): 780–782. doi: 10.1016/j.ympev.2003.12.006.
• Hilu KW, Borsch T, Müller KF, Soltis DE, Soltis PS, Savolainen V, Chase M, Powell M, Alice, Evans R, Sauquet H, Neinhuis C, Slotta, Rohwer, und Campbell, Chatrou L. 2003. „Angiosperm phylogeny based on matK sequence information.“ American Journal of Botany, Nr. 90: 1758–1776. doi: 10.3732/ajb.90.12.1758.
• Quandt, D, Müller, KF, und Huttunen, S. 2003. „Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions.“ Plant Biology, Nr. 5: 400–410. doi: 10.1055/s-2003-42715.
• Müller, J, und Müller, KF. 2003. „QuickAlign: A New Alignment Editor.“ Plant Molecular Biology Reporter, Nr. 21: 1–5. doi: 10.1007/BF02773390.
• Müller, KF, Borsch, T, Legendre, L, Theisen, I, und Barthlott, W. 2002. „Evolution of carnivory in the Lentibulariaceae: considerations based on molecular, morphological, and physiological evidence.“ Proceedings of the 4th International Carnivorous Plant Conference, Tokyo, Japan 2002: 63–73.
• Frahm, KF, Müller, und M, Stech. 2000. „The taxonomic status of Eurhynchium crassinervium from river banks based on ITS sequence data.“ Journal of Bryology, Nr. 22: 291–306.

Forschungsartikel (Buchbeiträge)

• KF, Müller. 2022. „Magnoliopsida (Angiosperms) p.p. Subclass Rosidae p.p. (Trochodendranae to Saxifraganae).“ In Syllabus of Plant Families - Part 5/1, herausgegeben von W Frey. Stuttgart: Borntraeger.
• Müller, KF, Fischer, und E. 2022. „Magnoliopsida (Angiosperms) p.p. Subclass Rosidae p.p. (Rosanae to Berberidopsidanae).“ In Syllabus of Plant Families - Part 5/1, herausgegeben von W Frey. Stuttgart: Borntraeger.
• Grimm, J, Hoffmann, M, Stöver, BC, Müller, KF, und Steinhage, V. 2016. „Image-Based Identification of Plant Species Using a Model-Free Approach and Active Learning.“ In KI 2016: Advances in Artificial Intelligence, Lecture Notes in Computer Science, herausgegeben von G Friedrich, M Helmert und F Wotawa. Basel: Springer International Publishing. doi: 10.1007/978-3-319-46073-4_16.
• Wicke, S, und Schneeweiss, GM. 2015. „Next generation organellar genomics: Potentials and pitfalls of high-throughput technologies for molecular evolutionary studies and plant systematics.“ In Next generation sequencing in plant systematics, Regnum Vegetabile, herausgegeben von E Hörandl und M Appelhans. Oberreifenberg / Koenigstein: Koeltz. doi: 10.14630/000002.
• Wicke, S. 2013. „Genomic evolution in Orobanchaceae.“ In Parasitic Orobanchaceae - Parasitic Mechanisms and Control Strategies , herausgegeben von DM Joel, J Gressel und LJ Musselman. Düsseldorf: Springer VDI Verlag. doi: 10.1007/978-3-642-38146-1_15.
• Poschlod, P, Abedi, M, Bartelheimer, M, Drobnik, J, Rosbakh, S, und Saatkamp, A. 2013. „Seed Ecology and Assembly Rules in Plant Communities.“ In Vegetation Ecology, herausgegeben von E Van der Maarel und J Franklin. New York City: John Wiley & Sons. doi: 10.1002/9781118452592.ch6.
• KF, Müller. 2011. „Biodiversität und Evolution.“ In Perspektiven - Forschungsfragen der Zukunft, herausgegeben von J Behler, S Fischer, A Funke, B Hartmann, U Heimhofer, W Martens, KF Müller, K Schmidt, C Schuchart, M Spehr, O Trapp, M Wagner und C Zwierlein. Paderborn: Ferdinand Schöningh.
• Quandt, D, Müller, KF, Stech, M, Hilu, KW, Frey, W, Frahm, J-P, und Borsch, T. 2004. „Molecular evolution of the chloroplast trnL-F region in land plants.“ In Molecular Systematics of Bryophytes, Monographs in Systematic Botany from the Missouri Botanical Garden, herausgegeben von B Goffinet, V Hollowell und R Magill. St. Louis: Missouri Botanical Garden Press.
• Huttunen, S, Ignatov, MS, Müller, KF, und Quandt, D. 2004. „The phylogeny and evolution of epiphytism in three moss families Meteoriaceae, Brachytheciaceae, and Lembophyllaceae.“ In Molecular Systematics of Bryophytes, Monographs in Systematic Botany from the Missouri Botanical Garden, herausgegeben von B Goffinet, V Hollowell und R Magill. St. Louis: Missouri Botanical Garden Press.

Nicht-wissenschaftliche Beiträge (Zeitschriften)

• Asshoff, Roman, Dankbar, Julia, und Bartelheimer, Maik. 2024. „Pflanzliche Gipfelstürmer - Bedroht der Klimawandel die alpine Flora?“ Unterricht Biologie, Nr. 495: 32–38.
• Asshoff, R., Dankbar, J., und Bartelheimer, M. 2019. „Licht und Schatten. Mathematisieren im Biologieunterricht im Kontext einer ökologischen Freilandübung.“ Der mathematisch-naturwissenschaftliche Unterricht, Nr. 72 (03): 222–228.

Fachbücher (Monografien)

• Knoop, V, und Müller, KF. 2008. Gene und Stammbäume: Ein Handbuch zur molekularen Phylogenetik, 2. Aufl. Heidelberg: Spektrum Akademischer Verlag.
• Knoop, V, und Müller, KF. 2006. Gene und Stammbäume. Ein Handbuch zur molekularen Phylogenetik. Heidelberg: Spektrum Akademischer Verlag.

Qualifikationsschriften (Dissertationen, Habilitationsschriften)

• Stöver, und BC. 2018. „Software components for increased data reuse and reproducibility in phylogenetics and phylogenomics.“ Dissertationsschrift, WWU Münster.
• Bartelheimer, M. 2013. „Ecophysiology of root interactions and plant niche differentiation.“ Habilitationsschrift, University of Regensburg.
• Müller, Kai. 2005. „Evolution of Amaranthaceae - A case study integrating molecular phylogenetics and pollen data.“ Dissertationsschrift, Rheinische Friedrich-Wilhems-Universität Bonn.
• Bartelheimer, M. 2005. „Pflanzliche Interaktionen in ressourcenarmen Sandökosystemen: Die Bedeutung funktioneller und morphologischer Wurzelparameter für die unterirdische Konkurrenzfähigkeit.“ Dissertationsschrift, University of Bielefeld.