© Uni MS - EvoPAD

Publications

Below you can find publications from work carried out within the EvoPAD framework.

  • 2023

    • Laenger ZM, Baur M, Korša A, J. Eirich, AS Lindeza, Zanchi C, Finkemeier I, Kurtz J (2023). Differential proteome profiling of Bacillus thuringiensis culture supernatants reveals candidates for the induction of oral immune priming in Tribolium castaneum (Biology Letters, accepted for publication October 2023)
    • Kalyanaraman, D., Riemsloh, K. M. Z., Kürschner, L. K., Gadau, J., & Lammers, M. (2023). Substantial fitness costs in terms of parasitization rates, offspring production and sex ratio of Wolbachia infection in Nasonia vitripennis without modified host preference. Ecological Entomology. 10.1111/een.13271 [doi]
    • Sun, W., Lange, M. I., Gadau, J., & Buellesbach, J. (2023). Decoding the genetic and chemical basis of sexual attractiveness in parasitic wasps. eLife 12:e86182.  10.7554/eLife.86182 [doi]

    • Kranke N (2023) Explanatory integration and integrated explanations in Darwinian medicine and evolutionary medicine. Theoretical Medicine and Bioethics 44:1-20. 10.1007/s11017-022-09594-z [doi]

    • Schulz C*, Lemoine MD*, Mearini G, Koivumäki J, Sani J, Schwedhelm E, Kirchhof P, Ghalawinji A, Stoll M, Hansen A, Eschenhagen T,  Christ T (2023) PITX2 knockout induces key findings of electrical remodeling as seen in persistent atrial fibrillation. Circulation: Arrhythmia and Electrophysiology 16(3):e011602. 10.1161/CIRCEP.122.011602 [doi]
      *equally contributing authors
    • Faist A*, Schloer S*, Mecate-Zambrano A, Janowski J, Schreiber A, Boergeling Y, Conrad BCG, Kumar S, Toebben L, Schughart K, Baumgardt M, Kessler M, Hoenzke K, Hocke A, Trautmann M, Hartmann W, Kato H, Rescher U, Christersson A, Kuehn J, Mellmann A, Wolff T, Kuempers P, Rovas A, Wiewrodt R, Wiebe K, Barth P, Ludwig S, Brunotte L (2023) Inhibition of p38 signaling curtails the SARS-CoV-2 induced inflammatory response but retains the IFN-dependent antiviral defense of the lung epithelial barrier. Antiviral Research 209:105475. 10.1016/j.antiviral.2022.105475 [doi]
      *equally contributing authors
    • Churakov G, Kuritzin A, Chukharev K, Zhang F, Wünnemann F, Ulyantsev V, Schmitz J (2023) A 4-lineage statistical suite to evaluate the support of large-scale retrotransposon insertion data to reconstruct evolutionary trees. Systematic Biology 72(3):649-661. 10.1016/j.antiviral.2022.105475 [doi]
    • Stieger B, Wesseler Y, Kaiser S, Sachser N, Richter SH (2023) Behavioral lateralization of mice varying in serotonin transporter genotype. Frontiers in Behavioral Neuroscience 16:1095567. 10.3389/fnbeh.2022.1095567 [doi]
    • Ferrando VA, Friedrich ME, Gandhi S, Mellmann A, Masemann D, Christersson A, Anhlan D, Brunotte L, Stoll M, Harder T, Beer M (2023) Cell-intrinsic genomic reassortment of pandemic H1N1 2009 and Eurasian avian-like swine influenza viruses results in potentially zoonotic variants. Emerging Microbes & Infections 12(1):2212809. 10.1080/22221751.2023.2212809 [doi]

  • 2022

    • Peng, L., Dumevi, R.M., Chitto, M., Haarmann, N., Berger, P., Koudelka, G., Schmidt, H., Mellmann, A., Dobrindt, U. and Berger, M., (2022). A Robust One-Step Recombineering System for Enterohemorrhagic Escherichia coli. Microorganisms, 10(9), p.1689. 10.3390/microorganisms10091689 [doi]
    • Kranke N (2022) The Trees’ Tale: Filigreed Phylogenetic Trees and Integrated Narratives. In: Morgan, M.S., Hajek, K.M. & Berry, D.J. (eds.), Narrative Science: Reasoning, Representing and Knowing since 1800. Cambridge University Press, 206-226. 10.1017/9781009004329.011 [doi]
    • Wang, Y., Sun, W., Fleischmann, S., Millar, J. G., Ruther, J., & Verhulst, E. C. (2022). Silencing Doublesex expression triggers three-level pheromonal feminization in Nasonia vitripennis males. Proceedings of the Royal Society B, 289(1967), 20212002.  10.1098/rspb.2021.2002 [doi]
    • Zhang F, Raabe CA, Cardoso-Moreira M, Brosius J, Kaesssmann H, Schmitz J (2022) ExoPLOT: Representation of alternative splicing in human tissues and developmental stages with transposed element (TE) involvement. Genomics 114(4):110434. 10.1016/j.ygeno.2022.110434 [doi]
    • Feige-Diller J, Herrera-Rivero M, Witten A, Stoll M, Kaiser S, Richter SH, Sachser N (2022) The impact of varying food availability on gene expression in the liver: Testing the match-mismatch hypothesis. Frontiers in Nutrition 9:91076. 10.3389/fnut.2022.910762 [doi]
    • Steffen R, Ogoniak L, Grundmann N, Pawluchin A, Soehnlein O, Schmitz J (2022) paPAML: An improved computational tool to explore selection pressure on protein-coding sequences. Genes 13(6):1090. 10.3390/genes13061090 [doi]
    • Stieger B, Palme R, Kaiser S, Sachser N, Richter SH (2022) When left is right: The effects of paw preference training on behaviour in mice. Behavioural Brain Research 430:113929. 10.1016/j.bbr.2022.113929 [doi]
    • Faist A*, Janowski J*, Kumar S, Hinse SS, Çalışkan DM, Lange J, Ludwig S, Brunotte L (2022) Virus infection and systemic inflammation: Lessons learnt from COVID-19 and beyond. Cells 11(14):2198. 10.3390/cells11142198 [doi]
      *equally contributing authors
    • Kranke N (2022) Two kinds of historical explanation in Evolutionary Biology. Biology and Philosophy 37:17. 10.1007/s10539-022-09848-z [doi]
    • Korša A, Lo LK, Gandhi S, Bang C, Kurtz J (2022) Oral immune priming treatment alters microbiome composition in the red flour bBeetle Tribolium castaneum. Frontiers in Microbiology 13:793143. 10.3389/fmicb.2022.793143 [doi]
    • Keizers M, Dobrindt U, Berger M (2022) A simple biosensor-based assay for quantitative autoinducer-2 analysis. ACS Synthetic Biology 11(2):747-759 10.1021/acssynbio.1c00459?ref=PDF [doi]

    • Herrera-Rivero M, Gandhi S, Witten A, Ghalawinji A, Schotten U, Stoll M (2022) Cardiac chamber-specific genetic alterations suggest candidate genes and pathways implicating the left ventricle in the pathogenesis of atrial fibrillation. Genomics 114(2):110320. 10.1016/j.ygeno.2022.110320 [doi]

    • Schröder NCH, Korša A, Wami H, Mantel O, Dobrindt U, Kurtz J (2022) Serial passage in an insect host indicates genetic stability of the human probiotic Escherichia coli Nissle 1917. Evolution, Medicine, and Public Health 10(1):71–86. 10.1093/emph/eoac001 [doi]

    • Schuhenn J*, Meister TL*, Todt D, Bracht T, Schork K, Billaud JN, Elsner C, Heinen N, Karakoese Z, Haid S, Kumar S, Brunotte L, Eisenacher M, Di Y, Lew J, Falzarano D, Chen J, Yuan Z, Pietschmann T, Wiegmann B, Uebner H, Taube C, Le-Trilling VTK, Trilling M, Krawczyk A, Ludwig S, Sitek B, Steinmann E, Dittmer U, Lavender KJ, Sutter K, Pfaender S (2022) Differential interferon-α subtype iInduced immune signatures are associated with suppression of SARS-CoV-2 infection. Proceedings of the National Academy of Sciences USA 119(8):e2111600119. 10.1073/pnas.211160011 [doi]
      *equally contributing authors

    • Rehm N, Wallenstein A, Keizers M, Homburg S, Magistro G, Chagneau CV, Klimek H, Revelles O, Helloin E, Putze J, Nougayrède JP (2022) Two polyketides intertwined in complex regulation: Posttranscriptional CsrA-mediated control of colibactin and yersiniabactin synthesis in Escherichia coli. mBio 13(1):e03814-21. 10.1128/mbio.03814-21 [doi]

    • Grandchamp A, Berk K, Dohmen E, Bornberg-Bauer E (2022) New genomic signals underlying the emergence of human proto-genes. Genes 13(2):284. 10.3390/genes13020284 [doi]

  • 2021

    • Del Sarto, J., Gerlt, V., Friedrich, M. E., Anhlan, D., Wixler, V., Teixeira, M. M., ... & Ludwig, S. (2021). Phosphorylation of JIP4 at S730 presents antiviral properties against influenza A virus infection. Journal of Virology, 95(20), 10-1128. 10.1128/jvi.00672-21 [doi]
    • Gati NS, Altinok OA, Kumar S, Ferrando VA, Kurtz J, Quante M, Ludwig S, Mellmann A (2021) Integrating evolutionary aspects into dual-use discussion: the cases of influenza virus and enterohemorrhagic Escherichia coli. Evolution, Medicine, and Public Health 9(1):383-392. 10.1093/emph/eoab034 [doi]
    • Kumar S, Çalişkan DM, Janowski J, Faist A, Conrad BCG, Lange J, Ludwig S, Brunotte L (2021) Beyond vaccines: Clinical status of prospective COVID-19 therapeutics. Frontiers in Immunology 12:752227. 10.3389/fimmu.2021.752227 [doi]
    • Vitali V, Rothering R, Catania F (2021) Fifty generations of amitosis: Tracing asymmetric allele segregation in polyploid cells with single-cell DNA sequencing. Microorganisms 9(9):1979. 10.3390/microorganisms9091979 [doi]
    • Martens L, Rühle F, Witten A, Meder B, Katus HA, Arbustini E, Hasenfuß G, Sinner MF, Kääb S, Pankuweit S, Angermann C, Bornberg-Bauer E, Stoll M (2021) A genetic variant alters the secondary structure of the lncRNA H19 and is associated with dilated cardiomyopathy. RNA Biology, 18:409-415. 10.1080/15476286.2021.1952756 [doi]
    • Rivard EL, Ludwig AG, Patel PH, Grandchamp A, Arnold SE, Berger A, Scott EM, Kelly BJ, Mascha GC, Bornberg-Bauer E, Findlay GD (2021) A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. PLoS Genetics 17(9):e1009787. 10.1371/journal.pgen.1009787 [doi]
    • Gandhi S, Witten A, De Majo F, Gilbers M, Maessen J, Schotten U, de Windt LJ, Stoll M (2021) Evolutionarily conserved transcriptional landscape of the heart defining the chamber specific physiology. Genomics 113(6):3782-3792. 10.1016/j.ygeno.2021.09.002 [doi]
    • Catania F, Ujvari B, Roche B, Capp JP, Thomas F (2021) Bridging tumorigenesis and therapy resistance with a non-Darwinian and non-Lamarckian mechanism of adaptive evolution. Frontiers in Oncology 11:732081. 10.3389/fonc.2021.732081 [doi]
    • Gati NS, Temme IJ, Middendorf-Bauchart B, Kehl A, Dobrindt U, Mellmann A (2021) Comparative phenotypic characterization of hybrid Shiga toxin-producing / uropathogenic Escherichia coli, canonical uropathogenic and Shiga toxin-producing Escherichia coli. International Journal of Medical Microbiology 311(7):151533. 10.1016/j.ijmm.2021.151533 [doi]
    • De Majo F, Martens L, Hegenbarth JC, Rühle F, Hamczyk MR, Nevado RM, Andrés V, Hilbold E, Bär C, Thum T, de Boer M, Duncker DJ, Schroen B, Armand AS, Stoll M, De Windt LJ (2021) Genomic instability in the naturally and prematurely aged myocardium. Proceedings of the National Academy of Sciences USA 118(36):e2022974118. 10.1073/pnas.2022974118 [doi]
    • Kalyanaraman D, Gadau J, Lammers M (2021). The generalist parasitoid Nasonia vitripennis shows more behavioural plasticity in host preference than its three specialist sister species. Ethology 127(11):964-978.  10.1111/eth.13217 [doi]
    • Catania F, Baedke J, Fábregas‐Tejeda A, Nieves Delgado A, Vitali V, Nguyen Long L. (2021) Global climate change, diet and the complex relationship between human host and microbiome: Towards an integrated picture. BioEssays e2100049. 10.1002/bies.202100049 [doi]
    • Stieger B, Melotti L, Quante SM, Kaiser S, Sachser N, Richter SH (2021) A step in the right direction: the effect of context, strain and sex on paw preference in mice. Animal Behaviour 174:21-30. 10.1016/j.anbehav.2021.01.012 [doi]
    • Schrader L, Winter M, Errbii M, Delabie J, Oettler J, Gadau J (2021) Inhibition of HSP90 causes morphological variation in the invasive ant Cardiocondyla obscurior. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution [online ahead of print] 10.1002/jez.b.23035 [doi]
    • Desjardins E, Kurtz J, Kranke N, Lindeza AS, Richter SH (2021) Beyond standardization: Improving external validity and reproducibility in experimental evolution. BioScience biab008. 10.1093/biosci/biab008 [doi]
    • Patil A, Anhlan D, Ferrando V, Mecate-Zambrano A, Mellmann A, Wixler V, Boergeling Y, Ludwig S (2021) Phosphorylation of influenza A virus NS1 at serine 205 mediates its viral polymerase-enhancing function. Journal of Virology 95(6):e02369-20. 10.1128/JVI.02369-20 [doi]
    • Effelsberg N, Stegger M, Peitzmann L, Altinok O, Coombs GW, Pichon B, Kearns A, Randad PR, Heaney CD, Bletz S, Schaumburg F, Mellmann A (2021) Global epidemiology and evolutionary history of Staphylococcus aureus ST45. Journal of Clinical Microbiology 59:e02198-20. 10.1128/JCM.02198-20 [doi]
    • Feige-Diller J, Palme R, Kaiser S, Sachser N, Richter SH (2021) The impact of varying food availability on health and welfare in mice: Testing the Match-Mismatch hypothesis. Physiology & Behavior 228:113193. 10.1016/j.physbeh.2020.113193 [doi]

    Preprints

    • Catania F, Hagen R, Vitali V. Prolonged exposure to constant environmental conditions prompts nonrandom genetic variation. bioRxiv. 10.1101/2020.04.07.030270 [doi]
    • Lindeza AS, Barth K, Kurtz J, Zanchi C. A Gene Knock-Down Approach in Tribolium castaneum to Study Survival and Priming Towards Bacillus thuringiensis var. tenebrionis. Preprints 2021010531. 10.20944/preprints202101.0531.v1 [doi]
    • Kranke N. Do concepts of individuality account for individuation practices in studies of host-parasite systems? A modelling account of biological individuality. PhilSci Archive 18610. http://philsci-archive.pitt.edu/id/eprint/18610

  • 2020

    • Hagen R, Vitali V, Catania F (2020) Cross-Generational Effects and Non-random Developmental Response to Temperature Variation in Paramecium. Frontiers in Cell and Developmental Biology 8:584219. 10.3389/fcell.2020.584219 [doi]
    • Klees S*, Effelsberg N*, Stührenberg B, Mellmann A, Schwarz S, Köck R (2020) Prevalence and Epidemiology of Multidrug-Resistant Pathogens in the Food Chain and the Urban Environment in Northwestern Germany. Antibiotics 9:708. 10.3390/antibiotics9100708 [doi]
      *equally contributing authors
    • Dowling D, Schmitz JF, Bornberg-Bauer E (2020) Stochastic gain and loss of novel transcribed open reading frames in the human lineage. Genome Biology and Evolution 12(11):2183-2195. 10.1093/gbe/evaa194 [doi]
    • Churakov G*, Zhang F*, Grundmann N, Makalowski W, Noll A, Doronina L, Schmitz J (2020) The multi-comparative 2-n-way genome suite. Genome Research 30:1508-1516. 10.1101/gr.262261.120 [doi]
      *equally contributing authors
    • Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, Marcus von Reumont B, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O (2020) Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biol Evol evaa106 [online ahead of print]. 10.1093/gbe/evaa106 [doi]
    • Dennis AB, Ballesteros GI, Robin S, Schrader L, Bast J, Berghöfer J, Beukeboom LW, Belghazi M, Bretaudeau A, Buellesbach J, Cash E, Colinet D, Dumas Z, Errbii M, Falabella P, Gatti JL, Geuverink E, Gibson JD, Hertaeg C, Hartmann S, Jacquin-Joly E, Lammers M, Lavandero BI, Lindenbaum I, Massardier-Galata L, Meslin C, Montagné N, Pak N, Poirié M, Salvia R, Smith CR, Tagu D, Tares S, Vogel H, Schwander T, Simon JC, Figueroa C, Vorburger C, Legeai F, Gadau J (2020) Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. BMC Genomics 21(1):376. 10.1186/s12864-020-6764-0 [doi]
    • Kranke N (2020) How the Suffering of Nonhuman Animals and Humans in Animal Research is Interconnected. Journal of Animal Ethics 10(1):41-48. 10.5406/janimalethics.10.1.0041 [doi]
    • Zanchi C*, Lindeza AS*, Kurtz J (2020) Comparative Mortality and Adaptation of a Smurf Assay in two Species of Tenebrionid Beetles Exposed to Bacillus thuringiensis. Insects 11:261. 10.3390/insects11040261 [doi]
      *equally contributing authors
    • Thind AS*, Vitali V*, Guarracino MR, Catania F (2020) What's genetic variation got to do with it? Starvation-induced self-fertilizartion enhances survival in Paramecium. Genome Biol Evol 12:626-638. 10.1093/gbe/evaa052 [doi]
      *equally contributing authors
    • Feige-Diller J, Krakenberg V, Bierbaum L, Seifert L, Palme R, Kaiser S, Sachser N, Richter SH (2020) The Effects of Different Feeding Routines on Welfare in Laboratory Mice. Frontiers in Veterinary Science 6:479. 10.3389/fvets.2019.00479 [doi]
    • Effelsberg N, Udarcev S, Müller H, Kobusch I, Linnemann S, Boelhauve M, Köck R, Mellmann A (2020) Genotypic characterization of livestock-associated methicillin-resistant Staphylococcus aureus isolates of clonal complex 398 in pigsty visitors: transient carriage or persistence? Journal of Clinical Microbiology 58:e01276-19. 10.1128/JCM.01276-19 [doi]

  • 2019

    • Gati NS, Middendorf-Bauchart B, Bletz S, Dobrindt U & Mellmann A (2019) Origin and evolution of hybrid Shiga toxin-producing and uropathogenic (STEC/UPEC) Escherichia coli of sequencing type 141. Journal of Clinical Microbiology [epub ahead of print] 10.1128/JCM.01309-19 [doi]
    • Vitali V, Hagen R & Catania F (2019) Environmentally induced plasticity of programmed DNA elimination boosts somatic variability in Paramecium tetraurelia. Genome Research 29:1693-1704. 10.1101/gr.245332.118 [doi]
    • Altinok OA (2019) Mao's Marxist Negation of Marxism. Asian Studies 7(1):75-96. 10.4312/as.2019.7.1.75-96 [doi]
    • Gandhi S, Ruehle F & Stoll M (2019) Evolutionary Patterns of Non-Coding RNA in Cardiovascular Biology. Noncoding RNA 5(1):15. 10.3390/ncrna5010015 [doi]

  • 2018

    • Richter SH & Hintze S (2018) From the individual to the population and back again? Emphasising the role of the individual in animal welfare science. Applied Animal Behaviour Science 212: 1-8. 10.1016/j.applanim.2018.12.012 [doi]
    • Langhanki L, Berger P, Treffon J, Catania F, Kahl BC & Mellmann A (2018) In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans. BMC Microbiology 18: 152. 10.1186/s12866-018-1308-3 [doi]
    • Vitali V, Horn F & Catania F (2018) Insulin-like signalling within and beyond metazoans. Biological Chemistry 399: 851-857. 10.1515/hsz-2018-0135 [doi]
    • Bayersdorf R, Fruscalzo A & Catania F (2018) Linking autoimmunity to the origin of the adaptive immune system. Evolution, Medicine, and Public Health 2018(1): 2-12. 10.1093/emph/eoy001 [doi]
    • Doronina L & Kranke N (2018) Das Verwandtschaftsnetz von Fledermaus, Pferd, Hund und Kuh. Biologie in unserer Zeit 48(5): 287-288. 10.1002/biuz.201870505 [doi]

  • 2017

    • Catania F (2017) From intronization to intron loss: How the interplay between mRNA-associated processes can shape the architecture and the expression of eukaryotic genes. The International Journal of Biochemistry & Cell Biology 91: 136-144. 10.1016/j.biocel.2017.06.017 [doi]