Write HTML report
Write HTML report
Description
Create a HTML report for peptide-spectral matching results.
Input files
- exactly 1 PSM list file (.csv)
Output files
- HTML report (omssa-report.html)
Context
Parameters
- Write identified proteins by spectral count
-
Default: true
- Write identified proteins by spot
-
Default: true
- Write identified proteins by distinct peptide count
-
Default: true
- Write additional peptides identified by GPF
-
Default: true
- Write ambiguous peptides
-
Default: true
- Write all identified peptides
-
Default: true
- Write modified peptides
-
Default: true
Tweaks
- Putative entry prefix
-
Default: putative
Source code
write-omssa-report.rb, write-omssa-report.yaml (GitHub)