Strip mzML files
Strip mzML files
Description
Strip certain scan from a mzML file, based on MS levels or scan IDs. Scan IDs can be specified as a parameter or via text files or PSM list files.
Input files
- at least 1 mzML file (.mzml | .mzml.bz2 | .mzml.gz | .mzml.zip)
- optional: PSM list files (.csv)
- optional: Scan IDs files (.txt)
Output files
This is a converter script which produces a stripped mzML files file for every input mzML file.
Context
No context information available.
Parameters
- Strip MS levels
- Specify which levels to strip, leave blank if you don’t want this.
Examples: 1, 1,2
- Scan ID action
- Choose whether scans specified in text and PSM list files should be kept or stripped.
Choices: strip (default), keep
- Compress result file
-
Choices: no compression, gzip (default), bzip2
Source code
strip-mzml.rb, strip-mzml.yaml (GitHub)