Create six frame translation
Create six frame translation
Description
This script creates a six frame translation from a set of genomic FASTA databases.
Input files
- at least 1 database file (.fa | .faa | .fas | .fasta)
Output files
- Six frame translation (sixframes.fasta)
Context
Parameters
- Frames
- Specify which frames should be translated.
Choices: 1, 2, 3, 4, 5, 6
- Format
- Specify the ID line format, where %1 is basename, %2 is scaffold and %3 is the frame number
Default: ORF_%1_%2_frame%3
Source code
sixframes.rb, sixframes.yaml (GitHub)