Extract OMSSA results
Extract OMSSA results
Description
Extract peptides and proteins, both unmodified and modified.
Input files
- exactly 1 PSM list file (.csv)
Output files
- All peptides (all-peptides.txt)
- Modified peptides (modified-peptides.txt)
- All proteins (all-proteins.txt)
- Modified proteins (modified-proteins.txt)
Context
Parameters
- Distinct peptides
- Specify how many distinct, proteotypic peptides must be identified in order to consider a protein identified.
Default: 2
Source code
extract-omssa-results.rb, extract-omssa-results.yaml (GitHub)