Convert OMSSA CSV to mzIdentML
Contents
Convert OMSSA CSV to mzIdentML
Description
Convert OMSSA CSV output files to the mzIdentML file format. Attention: Only peptide identifications are reported in the output file, details about the database search (mass tolerances, enzyme, …) are not saved.
Input files
- at least 1 OMSSA PSM file (.csv)
Output files
This is a converter script which produces a mzIdentML files file for every input OMSSA PSM file.
Context
Source code
csv-to-mzidentml.rb, csv-to-mzidentml.yaml (GitHub)