Chop FASTA databases
Chop FASTA databases
Description
Chop FASTA databases into chunks.
Input files
- optional: FASTA database files (.fa | .faa | .fas | .fasta)
Output files
This is a converter script which produces a chopped database file for every input FASTA database file.
Context
Parameters
- Chunk size
-
Default: 400
- Chunk overlap
-
Default: 50.0 %
Source code
chop-fasta.rb, chop-fasta.yaml (GitHub)