Check FASTA databases
Check FASTA databases
Description
Check FASTA databases for redundant id lines and protein/nucleotide sequences. If you find that there are redundancies and choose to receive output files which will help you in removing redundancies please process one database at a time.
Input files
- at least 1 FASTA database file (.fa | .faa | .fas | .fasta)
Output files
- Fixed database (fixed-database.fasta)
Context
Parameters
- Max id line length
-
Default: 400 characters
Source code
check-fasta.rb, check-fasta.yaml (GitHub)