Analyze PSM
Analyze PSM
Description
Analyze peptide-spectral matches.
Input files
- at least 1 OMSSA results file (.csv)
Output files
- PSM analysis (psm-analysis.xhtml)
Context
Parameters
- FPR calculation
-
Choices: 2 * decoys / (decoys + targets)) (default), decoys / targets
Tweaks
- Target entry prefix
- This will be prepended to every target entry during target/decoy generation.
Default: __td__target_
- Decoy entry prefix
- This will be prepended to every decoy entry during target/decoy generation.
Default: __td__decoy_
- Amount of decoys per target
- Specify how many decoys have been generated for every target.
Default: 1
Source code
analyze-psm.rb, analyze-psm.yaml (GitHub)